miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 466 0.66 0.329588
Target:  5'- --aGGGCGuugaccucGGC-GACGcGGCGCGCGuGUu -3'
miRNA:   3'- ccgCCCGC--------UCGaCUGC-CCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 917 0.67 0.280777
Target:  5'- uGGCGGGUGAuGgUGucgcccaucuucACGGGCGUGCc-- -3'
miRNA:   3'- -CCGCCCGCU-CgAC------------UGCCCGCGCGccg -5'
24105 3' -64.8 NC_005262.1 + 1143 0.68 0.243659
Target:  5'- uGCGGGCuucGAuGCUGccgcGCGGGCuugccauccuGCGCGGa -3'
miRNA:   3'- cCGCCCG---CU-CGAC----UGCCCG----------CGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 1910 0.68 0.255557
Target:  5'- aGCgGGGCGgaGGgUG-CGGGuUGCGUGGCu -3'
miRNA:   3'- cCG-CCCGC--UCgACuGCCC-GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 3725 0.69 0.215924
Target:  5'- aGCuGGGCcuGCgccugGAUGGGUuccGCGCGGCu -3'
miRNA:   3'- cCG-CCCGcuCGa----CUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 4623 0.72 0.127015
Target:  5'- aGCGGGCccguGAGCUGcuucuucGCGuccuccauGCGCGCGGCg -3'
miRNA:   3'- cCGCCCG----CUCGAC-------UGCc-------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 4888 0.66 0.337051
Target:  5'- cGGuCGGGCcgccGGcCUGAuCGcGCaGCGCGGCa -3'
miRNA:   3'- -CC-GCCCGc---UC-GACU-GCcCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 5078 0.71 0.137197
Target:  5'- cGGCGGcGCGugcgaccGGCUcGGCGGuGCGCGCccGGUu -3'
miRNA:   3'- -CCGCC-CGC-------UCGA-CUGCC-CGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 5138 0.66 0.337051
Target:  5'- -aCGGGCGGcGCUGAUccugcucGGCGCGCugaucGGUg -3'
miRNA:   3'- ccGCCCGCU-CGACUGc------CCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 5181 0.74 0.088387
Target:  5'- cGGCGucGCGGGC--GCGGGCGCGgcCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGacUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 5366 0.68 0.249549
Target:  5'- --gGGGCGuccUUGACGGGCagggaCGCGGCc -3'
miRNA:   3'- ccgCCCGCuc-GACUGCCCGc----GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 7524 0.66 0.315029
Target:  5'- -uCGGGCaGGUUcGGC-GGCGCGuCGGCg -3'
miRNA:   3'- ccGCCCGcUCGA-CUGcCCGCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 10461 0.75 0.075415
Target:  5'- cGGUcGGCGAGgUaGCGGcGCGCGCGGUc -3'
miRNA:   3'- -CCGcCCGCUCgAcUGCC-CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 10762 0.67 0.293433
Target:  5'- cGGuUGuGGUGAuccgcccGCgc-CGGGCGCGCGGUa -3'
miRNA:   3'- -CC-GC-CCGCU-------CGacuGCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 12447 0.69 0.195241
Target:  5'- cGCGGuGcCGAGCUGcaugGCGGauucgaucuugccGCGCGCGGa -3'
miRNA:   3'- cCGCC-C-GCUCGAC----UGCC-------------CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 12564 0.68 0.232225
Target:  5'- cGGCGGcGCucgucGAGCUGcugcugccgccgGCGaGGCGuCGCGGa -3'
miRNA:   3'- -CCGCC-CG-----CUCGAC------------UGC-CCGC-GCGCCg -5'
24105 3' -64.8 NC_005262.1 + 12806 0.69 0.200614
Target:  5'- gGGCGGcGCGcAGCcGGCGcgugaagaaGGaGCGCGGCc -3'
miRNA:   3'- -CCGCC-CGC-UCGaCUGC---------CCgCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 12932 0.73 0.100791
Target:  5'- uGCGcGGCGcGCUGAaGGGCGUGCgcgacGGCa -3'
miRNA:   3'- cCGC-CCGCuCGACUgCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 13229 0.78 0.042842
Target:  5'- aGCGGGCucGGGCUGcgguugaACGGGUGCGCGaGCc -3'
miRNA:   3'- cCGCCCG--CUCGAC-------UGCCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 13460 0.78 0.042957
Target:  5'- cGCGGGCGcuucguccuGCgcGGCGGGCGCuGCGGCc -3'
miRNA:   3'- cCGCCCGCu--------CGa-CUGCCCGCG-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.