miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 35235 0.69 0.195724
Target:  5'- cGGCGGcGCGAucgGCagcGGCuGGGCGCcccCGGCg -3'
miRNA:   3'- -CCGCC-CGCU---CGa--CUG-CCCGCGc--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 5078 0.71 0.137197
Target:  5'- cGGCGGcGCGugcgaccGGCUcGGCGGuGCGCGCccGGUu -3'
miRNA:   3'- -CCGCC-CGC-------UCGA-CUGCC-CGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 40721 0.71 0.141114
Target:  5'- cGGCGGcGCugacgcccucGAGC--ACGGGCG-GCGGCg -3'
miRNA:   3'- -CCGCC-CG----------CUCGacUGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43835 0.7 0.164337
Target:  5'- cGCGGGCcGGCcgcgcgcGGCGGuGCGC-CGGCa -3'
miRNA:   3'- cCGCCCGcUCGa------CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 49154 0.7 0.168104
Target:  5'- cGGUGGGCGuGCaGGCcgcaucggccgcaGcGGCGCGCacGGCg -3'
miRNA:   3'- -CCGCCCGCuCGaCUG-------------C-CCGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 58639 0.7 0.168527
Target:  5'- cGGCaGuCGAGCgGcCGGGCGCGCGaGUu -3'
miRNA:   3'- -CCGcCcGCUCGaCuGCCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 59062 0.7 0.168527
Target:  5'- aGGUgcaGGaGCGcaucaagaAGCUGACGGGCGUGaaggagcuCGGCa -3'
miRNA:   3'- -CCG---CC-CGC--------UCGACUGCCCGCGC--------GCCG- -5'
24105 3' -64.8 NC_005262.1 + 29914 0.7 0.168952
Target:  5'- gGGCGaugcgaccacgcucGGCGAuaGCUGaaggacgacccggacGCGGGCG-GCGGCg -3'
miRNA:   3'- -CCGC--------------CCGCU--CGAC---------------UGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 53767 0.7 0.181676
Target:  5'- aGGaGGGCGGGCUGuACGucGGCGauacCGGCa -3'
miRNA:   3'- -CCgCCCGCUCGAC-UGC--CCGCgc--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 60684 0.72 0.134066
Target:  5'- uGCuGGCGAcGCUGggcuucuucGCGGGCGCGuCGGg -3'
miRNA:   3'- cCGcCCGCU-CGAC---------UGCCCGCGC-GCCg -5'
24105 3' -64.8 NC_005262.1 + 12932 0.73 0.100791
Target:  5'- uGCGcGGCGcGCUGAaGGGCGUGCgcgacGGCa -3'
miRNA:   3'- cCGC-CCGCuCGACUgCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 53819 0.74 0.090745
Target:  5'- cGGCacGGGCaucGAGCUGACGcaccggcgcGGCGCGgaCGGCa -3'
miRNA:   3'- -CCG--CCCG---CUCGACUGC---------CCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 56959 0.83 0.017025
Target:  5'- cGCGGGCGAGUUcGCGGGCGUGguCGGCa -3'
miRNA:   3'- cCGCCCGCUCGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 33924 0.82 0.021188
Target:  5'- cGGCGGuGcCGAGCUcgcGGCGGGCaCGCGGCa -3'
miRNA:   3'- -CCGCC-C-GCUCGA---CUGCCCGcGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17570 0.77 0.048763
Target:  5'- cGGCGGcGCGcgaagccgaggagaAGCUGGCGGcgcaGCGCGCGGa -3'
miRNA:   3'- -CCGCC-CGC--------------UCGACUGCC----CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 52612 0.76 0.066018
Target:  5'- -cCGGGCGAGCUGAagcgcaccggcuCGuGGCGCGCGaccGCa -3'
miRNA:   3'- ccGCCCGCUCGACU------------GC-CCGCGCGC---CG- -5'
24105 3' -64.8 NC_005262.1 + 51214 0.75 0.075415
Target:  5'- cGCGGGCGAuGCUGAucgcacCGGGCuccucaugcGCGcCGGCu -3'
miRNA:   3'- cCGCCCGCU-CGACU------GCCCG---------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 60492 0.75 0.081655
Target:  5'- --aGGGCGAGacgcCGGGcCGCGCGGCg -3'
miRNA:   3'- ccgCCCGCUCgacuGCCC-GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 63075 0.74 0.083843
Target:  5'- cGCGGGCGAGUaugcGGCGGcGUGCaaGGCg -3'
miRNA:   3'- cCGCCCGCUCGa---CUGCC-CGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 5181 0.74 0.088387
Target:  5'- cGGCGucGCGGGC--GCGGGCGCGgcCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGacUGCCCGCGC--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.