miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 61166 1.13 0.000093
Target:  5'- cGGCGGGCGAGCUGACGGGCGCGCGGCg -3'
miRNA:   3'- -CCGCCCGCUCGACUGCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34126 0.87 0.008812
Target:  5'- gGGuUGGGCGGGCUGcGCGGGCGCggGCGGCa -3'
miRNA:   3'- -CC-GCCCGCUCGAC-UGCCCGCG--CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 56959 0.83 0.017025
Target:  5'- cGCGGGCGAGUUcGCGGGCGUGguCGGCa -3'
miRNA:   3'- cCGCCCGCUCGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 33924 0.82 0.021188
Target:  5'- cGGCGGuGcCGAGCUcgcGGCGGGCaCGCGGCa -3'
miRNA:   3'- -CCGCC-C-GCUCGA---CUGCCCGcGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13229 0.78 0.042842
Target:  5'- aGCGGGCucGGGCUGcgguugaACGGGUGCGCGaGCc -3'
miRNA:   3'- cCGCCCG--CUCGAC-------UGCCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 13460 0.78 0.042957
Target:  5'- cGCGGGCGcuucguccuGCgcGGCGGGCGCuGCGGCc -3'
miRNA:   3'- cCGCCCGCu--------CGa-CUGCCCGCG-CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17570 0.77 0.048763
Target:  5'- cGGCGGcGCGcgaagccgaggagaAGCUGGCGGcgcaGCGCGCGGa -3'
miRNA:   3'- -CCGCC-CGC--------------UCGACUGCC----CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 46902 0.77 0.057756
Target:  5'- uGCGGGCGGuGCggUGugGugcggcccGGCGCGCGGCc -3'
miRNA:   3'- cCGCCCGCU-CG--ACugC--------CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 52612 0.76 0.066018
Target:  5'- -cCGGGCGAGCUGAagcgcaccggcuCGuGGCGCGCGaccGCa -3'
miRNA:   3'- ccGCCCGCUCGACU------------GC-CCGCGCGC---CG- -5'
24105 3' -64.8 NC_005262.1 + 51214 0.75 0.075415
Target:  5'- cGCGGGCGAuGCUGAucgcacCGGGCuccucaugcGCGcCGGCu -3'
miRNA:   3'- cCGCCCGCU-CGACU------GCCCG---------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 10461 0.75 0.075415
Target:  5'- cGGUcGGCGAGgUaGCGGcGCGCGCGGUc -3'
miRNA:   3'- -CCGcCCGCUCgAcUGCC-CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60492 0.75 0.081655
Target:  5'- --aGGGCGAGacgcCGGGcCGCGCGGCg -3'
miRNA:   3'- ccgCCCGCUCgacuGCCC-GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 63075 0.74 0.083843
Target:  5'- cGCGGGCGAGUaugcGGCGGcGUGCaaGGCg -3'
miRNA:   3'- cCGCCCGCUCGa---CUGCC-CGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 5181 0.74 0.088387
Target:  5'- cGGCGucGCGGGC--GCGGGCGCGgcCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGacUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 53819 0.74 0.090745
Target:  5'- cGGCacGGGCaucGAGCUGACGcaccggcgcGGCGCGgaCGGCa -3'
miRNA:   3'- -CCG--CCCG---CUCGACUGC---------CCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 38545 0.73 0.100791
Target:  5'- aGGCGGcGCagGAGCcGGCGuuGCGCGCGGUu -3'
miRNA:   3'- -CCGCC-CG--CUCGaCUGCc-CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 12932 0.73 0.100791
Target:  5'- uGCGcGGCGcGCUGAaGGGCGUGCgcgacGGCa -3'
miRNA:   3'- cCGC-CCGCuCGACUgCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 57518 0.73 0.101851
Target:  5'- cGGCGaaGGcCGAGCUGcugaccaucaucgagGCGGcaaagaccguGCGCGCGGCg -3'
miRNA:   3'- -CCGC--CC-GCUCGAC---------------UGCC----------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17342 0.73 0.111878
Target:  5'- cGGCGcGGCauucGGGUccgGcGCGGGCgGCGCGGCg -3'
miRNA:   3'- -CCGC-CCG----CUCGa--C-UGCCCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 4623 0.72 0.127015
Target:  5'- aGCGGGCccguGAGCUGcuucuucGCGuccuccauGCGCGCGGCg -3'
miRNA:   3'- cCGCCCG----CUCGAC-------UGCc-------CGCGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.