miRNA display CGI


Results 21 - 40 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 11626 0.68 0.437634
Target:  5'- cAUGcCCUCG-GCGuCGAGGCcGGGGUa -3'
miRNA:   3'- aUGCuGGAGCgCGC-GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 11875 0.66 0.546213
Target:  5'- gGCGACguguaUCGCGCGaaAGGUGGccgcGGCa -3'
miRNA:   3'- aUGCUGg----AGCGCGCgcUCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 12420 0.67 0.466098
Target:  5'- cGCGGCCUUG-GCcgGCGucGCGGAcGGCg -3'
miRNA:   3'- aUGCUGGAGCgCG--CGCucCGCUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 12990 0.68 0.392506
Target:  5'- cGCGACC-CGCGCGUGAcgugGGUGuacGCg -3'
miRNA:   3'- aUGCUGGaGCGCGCGCU----CCGCuucCG- -5'
24106 3' -59.5 NC_005262.1 + 13479 0.77 0.1055
Target:  5'- cGCGcGCgUCGCGCGCuacucgcuGGCGAAGGCg -3'
miRNA:   3'- aUGC-UGgAGCGCGCGcu------CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 13691 0.73 0.189482
Target:  5'- cGCgGugCUgGCGCGUGAGGuCGAAGuGCc -3'
miRNA:   3'- aUG-CugGAgCGCGCGCUCC-GCUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 14032 0.7 0.326895
Target:  5'- aGCGgccggaGCCUCGgGCGCG-GGCGccgccGGCg -3'
miRNA:   3'- aUGC------UGGAGCgCGCGCuCCGCuu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 14236 0.69 0.342509
Target:  5'- cACGGCCUCGUucuGCGCGAccuGCuGGAGcGCg -3'
miRNA:   3'- aUGCUGGAGCG---CGCGCUc--CG-CUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 14351 0.79 0.082439
Target:  5'- gACGugCUUGCGCGCGucgacuGGCGgcGGUg -3'
miRNA:   3'- aUGCugGAGCGCGCGCu-----CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 14559 0.75 0.149261
Target:  5'- cGCgGACCUCGCGCGCGGacuGCGcgccgccGAGGCc -3'
miRNA:   3'- aUG-CUGGAGCGCGCGCUc--CGC-------UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 15746 0.71 0.290198
Target:  5'- gUGCGACCgaCGCGCuuGCGGGcGCGGccGGCu -3'
miRNA:   3'- -AUGCUGGa-GCGCG--CGCUC-CGCUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 16407 0.68 0.437634
Target:  5'- -cCGGCCgccgggauucUGCGcCGCGAGGCGcAAGGa -3'
miRNA:   3'- auGCUGGa---------GCGC-GCGCUCCGC-UUCCg -5'
24106 3' -59.5 NC_005262.1 + 17053 0.73 0.194441
Target:  5'- cGCGAgCUCGuCGCGCGcacGGCGccgauAGGCg -3'
miRNA:   3'- aUGCUgGAGC-GCGCGCu--CCGCu----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 17165 0.68 0.425613
Target:  5'- --aGGCCggcaaggcCGCGCGCGAGGaCGcgaccgcguucagcAAGGCc -3'
miRNA:   3'- augCUGGa-------GCGCGCGCUCC-GC--------------UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 17261 0.69 0.381278
Target:  5'- gGCGGCCggCGCcgcgcugggcugcuGCGCG-GGCaGGGGCg -3'
miRNA:   3'- aUGCUGGa-GCG--------------CGCGCuCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 17544 0.76 0.127499
Target:  5'- cGCGG--UCGCGCGCGAGGCGGcagccgcGGCg -3'
miRNA:   3'- aUGCUggAGCGCGCGCUCCGCUu------CCG- -5'
24106 3' -59.5 NC_005262.1 + 17788 0.66 0.556569
Target:  5'- cGCGacGCCUUGCGCGUGcAGgaacGCGAAcacgcGGCu -3'
miRNA:   3'- aUGC--UGGAGCGCGCGC-UC----CGCUU-----CCG- -5'
24106 3' -59.5 NC_005262.1 + 19079 0.7 0.336983
Target:  5'- cGCGGCCgagcugcauuuccUCGCGCGC--GGCGAugccacguucggaucGGGCg -3'
miRNA:   3'- aUGCUGG-------------AGCGCGCGcuCCGCU---------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 19307 0.69 0.358652
Target:  5'- gACGugCUCgGCGaUGCGA-GUGAAGGUg -3'
miRNA:   3'- aUGCugGAG-CGC-GCGCUcCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 19774 0.66 0.519596
Target:  5'- cAUGGCCaaucUCGUGCGCGuggucgucgcacaucGGGCGGucGCa -3'
miRNA:   3'- aUGCUGG----AGCGCGCGC---------------UCCGCUucCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.