miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 988 0.69 0.342509
Target:  5'- gGCGACCUgCGgG-GCGGGGCGGuguAGaGCu -3'
miRNA:   3'- aUGCUGGA-GCgCgCGCUCCGCU---UC-CG- -5'
24106 3' -59.5 NC_005262.1 + 1893 0.66 0.53592
Target:  5'- cAUuGCC-CGUGCcuucgaGCGGGGCGGAGGg -3'
miRNA:   3'- aUGcUGGaGCGCG------CGCUCCGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 2398 0.75 0.145736
Target:  5'- ---cGCCUCGCGCGCGAGGuCGuaguagcGGCu -3'
miRNA:   3'- augcUGGAGCGCGCGCUCC-GCuu-----CCG- -5'
24106 3' -59.5 NC_005262.1 + 2832 0.66 0.53592
Target:  5'- -uCGACCUCGUuuGCGCGcuGGCGugcccGCa -3'
miRNA:   3'- auGCUGGAGCG--CGCGCu-CCGCuuc--CG- -5'
24106 3' -59.5 NC_005262.1 + 3294 0.67 0.475798
Target:  5'- gGCGGCCUgCGC-CGCGcGGCcc-GGCg -3'
miRNA:   3'- aUGCUGGA-GCGcGCGCuCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 4154 0.67 0.495491
Target:  5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3'
miRNA:   3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 4199 0.68 0.441372
Target:  5'- cACGACCacggccugaucguagUCGCGCGCGAuGUucuGGAGGa -3'
miRNA:   3'- aUGCUGG---------------AGCGCGCGCUcCG---CUUCCg -5'
24106 3' -59.5 NC_005262.1 + 4402 0.66 0.556569
Target:  5'- gUGCGAUgUCGCGCGCcugcuGcGCGAGcgccuggagcucGGCg -3'
miRNA:   3'- -AUGCUGgAGCGCGCGcu---C-CGCUU------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 4564 0.69 0.342509
Target:  5'- gGCGcAUCUCGCGCcaGCGGcGGCGcugcucGGGCg -3'
miRNA:   3'- aUGC-UGGAGCGCG--CGCU-CCGCu-----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 4646 0.66 0.525695
Target:  5'- cGCGuCCUCcaUGCGCGcGGCGAcgcGGCc -3'
miRNA:   3'- aUGCuGGAGc-GCGCGCuCCGCUu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 4809 0.74 0.184634
Target:  5'- cGCGACg--GCGCGgGAGGCGuGAGGCc -3'
miRNA:   3'- aUGCUGgagCGCGCgCUCCGC-UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 5076 0.68 0.437634
Target:  5'- gGCGGCggCGCGUGCGAccGGCuc-GGCg -3'
miRNA:   3'- aUGCUGgaGCGCGCGCU--CCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 5175 0.73 0.199514
Target:  5'- gACGGCCg-GCGuCGCG-GGCGcGGGCg -3'
miRNA:   3'- aUGCUGGagCGC-GCGCuCCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 8270 0.67 0.454595
Target:  5'- aGCGGCCgaggaagcugccCGCGUcgcucGCGAGGCGGccaagaAGGUg -3'
miRNA:   3'- aUGCUGGa-----------GCGCG-----CGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 8578 0.73 0.189482
Target:  5'- cGCGGCCU-GCGCGaCGAaGCGAcGGCg -3'
miRNA:   3'- aUGCUGGAgCGCGC-GCUcCGCUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 8786 0.67 0.468997
Target:  5'- -cCGACCgCGUGCGCGAGGUacaugucgccuuccuGAAugccgcgccagauGGCg -3'
miRNA:   3'- auGCUGGaGCGCGCGCUCCG---------------CUU-------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 9232 0.68 0.42837
Target:  5'- aGCG-CCUCGCuCGCGAacgcGGCGAcgucgcuGGCc -3'
miRNA:   3'- aUGCuGGAGCGcGCGCU----CCGCUu------CCG- -5'
24106 3' -59.5 NC_005262.1 + 9663 0.73 0.210006
Target:  5'- gAUGugCUCGaGCGaguAGGCGAGGGCg -3'
miRNA:   3'- aUGCugGAGCgCGCgc-UCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 10823 0.67 0.469966
Target:  5'- cACGACCagCGCauGCGCGuccgccgcgcucaggGGGCGGcaugagugaGGGCg -3'
miRNA:   3'- aUGCUGGa-GCG--CGCGC---------------UCCGCU---------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 11469 0.67 0.466098
Target:  5'- cUACcGCgCUCGCGCGCGAGcacauGGGCc -3'
miRNA:   3'- -AUGcUG-GAGCGCGCGCUCcgcu-UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.