miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 56598 0.72 0.250521
Target:  5'- gUGCGcAUC-CGCGCGUG-GGCGAcgaaGGGCa -3'
miRNA:   3'- -AUGC-UGGaGCGCGCGCuCCGCU----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 29453 0.73 0.189482
Target:  5'- cUGCGGCagaggCGCagguCGcCGAGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGga---GCGc---GC-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 59111 0.73 0.194441
Target:  5'- cUACGACUacuacCGCGC-CGAGGCGAAccGGCc -3'
miRNA:   3'- -AUGCUGGa----GCGCGcGCUCCGCUU--CCG- -5'
24106 3' -59.5 NC_005262.1 + 17053 0.73 0.194441
Target:  5'- cGCGAgCUCGuCGCGCGcacGGCGccgauAGGCg -3'
miRNA:   3'- aUGCUgGAGC-GCGCGCu--CCGCu----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 5175 0.73 0.199514
Target:  5'- gACGGCCg-GCGuCGCG-GGCGcGGGCg -3'
miRNA:   3'- aUGCUGGagCGC-GCGCuCCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 46167 0.73 0.215428
Target:  5'- cGCGAUCUC-CGaCGCGAcGGCcGAGGCg -3'
miRNA:   3'- aUGCUGGAGcGC-GCGCU-CCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 44146 0.72 0.22097
Target:  5'- -cCGGCCggacgCGCGCGCGAucgGGCaGGAGcGCg -3'
miRNA:   3'- auGCUGGa----GCGCGCGCU---CCG-CUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 57670 0.72 0.226633
Target:  5'- cACGAucgacuUCUCGCGCGCcGGGCGc-GGCa -3'
miRNA:   3'- aUGCU------GGAGCGCGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 49640 0.72 0.2499
Target:  5'- -gUGGCCUCGCGaucgGCGgccugcaAGGCGgcGGCa -3'
miRNA:   3'- auGCUGGAGCGCg---CGC-------UCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 13691 0.73 0.189482
Target:  5'- cGCgGugCUgGCGCGUGAGGuCGAAGuGCc -3'
miRNA:   3'- aUG-CugGAgCGCGCGCUCC-GCUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 55011 0.74 0.179895
Target:  5'- cAUGuACCUCGCGCacGCGGucGGCGcGGGCa -3'
miRNA:   3'- aUGC-UGGAGCGCG--CGCU--CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 29415 0.74 0.179895
Target:  5'- cGCGACgCUCGaggaGCaGC-AGGCGAAGGCc -3'
miRNA:   3'- aUGCUG-GAGCg---CG-CGcUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 23353 0.84 0.036636
Target:  5'- cACGGCCggcgugaaGCGCGCGGcGGCGAAGGCc -3'
miRNA:   3'- aUGCUGGag------CGCGCGCU-CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 29947 0.8 0.067912
Target:  5'- gACGACCcggaCGCGgGCGGcGGCGAAGGUg -3'
miRNA:   3'- aUGCUGGa---GCGCgCGCU-CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 14351 0.79 0.082439
Target:  5'- gACGugCUUGCGCGCGucgacuGGCGgcGGUg -3'
miRNA:   3'- aUGCugGAGCGCGCGCu-----CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 13479 0.77 0.1055
Target:  5'- cGCGcGCgUCGCGCGCuacucgcuGGCGAAGGCg -3'
miRNA:   3'- aUGC-UGgAGCGCGCGcu------CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 17544 0.76 0.127499
Target:  5'- cGCGG--UCGCGCGCGAGGCGGcagccgcGGCg -3'
miRNA:   3'- aUGCUggAGCGCGCGCUCCGCUu------CCG- -5'
24106 3' -59.5 NC_005262.1 + 39633 0.76 0.130969
Target:  5'- gACGcCCUCGCGCGC---GUGAAGGCa -3'
miRNA:   3'- aUGCuGGAGCGCGCGcucCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 46901 0.74 0.170742
Target:  5'- aACGuaCUCGCGCaggGCGAuccGGCGAAGGCg -3'
miRNA:   3'- aUGCugGAGCGCG---CGCU---CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 51416 0.74 0.170742
Target:  5'- cGCGugCUCgGCgGCGCGc-GCGAGGGCg -3'
miRNA:   3'- aUGCugGAG-CG-CGCGCucCGCUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.