miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 19774 0.66 0.519596
Target:  5'- cAUGGCCaaucUCGUGCGCGuggucgucgcacaucGGGCGGucGCa -3'
miRNA:   3'- aUGCUGG----AGCGCGCGC---------------UCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 11875 0.66 0.546213
Target:  5'- gGCGACguguaUCGCGCGaaAGGUGGccgcGGCa -3'
miRNA:   3'- aUGCUGg----AGCGCGCgcUCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 49687 0.66 0.556569
Target:  5'- gGCGGCg-CGCGCaaccugaaccGCGAcGGCGugccGGGCg -3'
miRNA:   3'- aUGCUGgaGCGCG----------CGCU-CCGCu---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 4402 0.66 0.556569
Target:  5'- gUGCGAUgUCGCGCGCcugcuGcGCGAGcgccuggagcucGGCg -3'
miRNA:   3'- -AUGCUGgAGCGCGCGcu---C-CGCUU------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 40731 0.66 0.546213
Target:  5'- gACGcCCUCGaGCaCG-GGCGgcGGCg -3'
miRNA:   3'- aUGCuGGAGCgCGcGCuCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 49758 0.66 0.546213
Target:  5'- gGCGGCgCcCGCGCcCGAGGCuccGGCc -3'
miRNA:   3'- aUGCUG-GaGCGCGcGCUCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 32283 0.66 0.515545
Target:  5'- aACGAUUaCG-GCGCGGGcGCGAacgucgAGGCa -3'
miRNA:   3'- aUGCUGGaGCgCGCGCUC-CGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 52529 0.66 0.534894
Target:  5'- -uCGGCCgaggagaUCGCGCugGCGcAGGCGAuggaaacgaucgAGGCc -3'
miRNA:   3'- auGCUGG-------AGCGCG--CGC-UCCGCU------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 50225 0.66 0.505475
Target:  5'- cACGACCgaaCGC-CGCaAGGUGucGGCc -3'
miRNA:   3'- aUGCUGGa--GCGcGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 26556 0.66 0.556569
Target:  5'- aGCGGCCgacgCGCuGCGCcAGuucGCGcAGGCa -3'
miRNA:   3'- aUGCUGGa---GCG-CGCGcUC---CGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 56963 0.66 0.505475
Target:  5'- gGCGAgUUCGCGgGCGuGGUc--GGCa -3'
miRNA:   3'- aUGCUgGAGCGCgCGCuCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 2832 0.66 0.53592
Target:  5'- -uCGACCUCGUuuGCGCGcuGGCGugcccGCa -3'
miRNA:   3'- auGCUGGAGCG--CGCGCu-CCGCuuc--CG- -5'
24106 3' -59.5 NC_005262.1 + 44432 0.66 0.53592
Target:  5'- gGCGACCUCGUGuCGCucGGCaugcugcgaGAGuGGUg -3'
miRNA:   3'- aUGCUGGAGCGC-GCGcuCCG---------CUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 46990 0.66 0.505475
Target:  5'- gGCGAaggcaUgGCGCGCGAcgcagaugGGCGAcaucgaGGGCg -3'
miRNA:   3'- aUGCUgg---AgCGCGCGCU--------CCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 60122 0.66 0.515545
Target:  5'- cACGAgggCGCcaGCGuCGcGGCGAAGGCa -3'
miRNA:   3'- aUGCUggaGCG--CGC-GCuCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 1893 0.66 0.53592
Target:  5'- cAUuGCC-CGUGCcuucgaGCGGGGCGGAGGg -3'
miRNA:   3'- aUGcUGGaGCGCG------CGCUCCGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 23562 0.66 0.525695
Target:  5'- aACcGCCcgcCGCGCGCG-GGCGcAGGa -3'
miRNA:   3'- aUGcUGGa--GCGCGCGCuCCGCuUCCg -5'
24106 3' -59.5 NC_005262.1 + 48445 0.66 0.543118
Target:  5'- cAUGACCaCGCGCGCGuaugccGcGCGGaucgcgagccgcguGGGCa -3'
miRNA:   3'- aUGCUGGaGCGCGCGCu-----C-CGCU--------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 49830 0.66 0.504473
Target:  5'- cGCGAUggaGCGCGCGAauggcccggugccGGCGgcGGUa -3'
miRNA:   3'- aUGCUGgagCGCGCGCU-------------CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 47566 0.66 0.556569
Target:  5'- gGCGACgUCGCcCGaCGAaGCGAAgcGGCu -3'
miRNA:   3'- aUGCUGgAGCGcGC-GCUcCGCUU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.