miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 61401 1.1 0.000418
Target:  5'- cUACGACCUCGCGCGCGAGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGGAGCGCGCGCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 52326 0.87 0.021981
Target:  5'- cAUGugCUCGCGCGCGAGcGCGGuAGGCa -3'
miRNA:   3'- aUGCugGAGCGCGCGCUC-CGCU-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 23353 0.84 0.036636
Target:  5'- cACGGCCggcgugaaGCGCGCGGcGGCGAAGGCc -3'
miRNA:   3'- aUGCUGGag------CGCGCGCU-CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 29947 0.8 0.067912
Target:  5'- gACGACCcggaCGCGgGCGGcGGCGAAGGUg -3'
miRNA:   3'- aUGCUGGa---GCGCgCGCU-CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 28953 0.8 0.069826
Target:  5'- cAUGugCUCGCGCGCGAGGaaguCGggGaGCu -3'
miRNA:   3'- aUGCugGAGCGCGCGCUCC----GCuuC-CG- -5'
24106 3' -59.5 NC_005262.1 + 14351 0.79 0.082439
Target:  5'- gACGugCUUGCGCGCGucgacuGGCGgcGGUg -3'
miRNA:   3'- aUGCugGAGCGCGCGCu-----CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 13479 0.77 0.1055
Target:  5'- cGCGcGCgUCGCGCGCuacucgcuGGCGAAGGCg -3'
miRNA:   3'- aUGC-UGgAGCGCGCGcu------CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 17544 0.76 0.127499
Target:  5'- cGCGG--UCGCGCGCGAGGCGGcagccgcGGCg -3'
miRNA:   3'- aUGCUggAGCGCGCGCUCCGCUu------CCG- -5'
24106 3' -59.5 NC_005262.1 + 39633 0.76 0.130969
Target:  5'- gACGcCCUCGCGCGC---GUGAAGGCa -3'
miRNA:   3'- aUGCuGGAGCGCGCGcucCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 38559 0.75 0.138171
Target:  5'- -cCGGCgUUGCGCGCGguucGGGCGGaaGGGCa -3'
miRNA:   3'- auGCUGgAGCGCGCGC----UCCGCU--UCCG- -5'
24106 3' -59.5 NC_005262.1 + 2398 0.75 0.145736
Target:  5'- ---cGCCUCGCGCGCGAGGuCGuaguagcGGCu -3'
miRNA:   3'- augcUGGAGCGCGCGCUCC-GCuu-----CCG- -5'
24106 3' -59.5 NC_005262.1 + 14559 0.75 0.149261
Target:  5'- cGCgGACCUCGCGCGCGGacuGCGcgccgccGAGGCc -3'
miRNA:   3'- aUG-CUGGAGCGCGCGCUc--CGC-------UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 52450 0.74 0.170742
Target:  5'- gACGugC-CGCGCGCGAGcggcgucuuGCGGAGGa -3'
miRNA:   3'- aUGCugGaGCGCGCGCUC---------CGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 46901 0.74 0.170742
Target:  5'- aACGuaCUCGCGCaggGCGAuccGGCGAAGGCg -3'
miRNA:   3'- aUGCugGAGCGCG---CGCU---CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 51416 0.74 0.170742
Target:  5'- cGCGugCUCgGCgGCGCGc-GCGAGGGCg -3'
miRNA:   3'- aUGCugGAG-CG-CGCGCucCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 55011 0.74 0.179895
Target:  5'- cAUGuACCUCGCGCacGCGGucGGCGcGGGCa -3'
miRNA:   3'- aUGC-UGGAGCGCG--CGCU--CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 29415 0.74 0.179895
Target:  5'- cGCGACgCUCGaggaGCaGC-AGGCGAAGGCc -3'
miRNA:   3'- aUGCUG-GAGCg---CG-CGcUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 4809 0.74 0.184634
Target:  5'- cGCGACg--GCGCGgGAGGCGuGAGGCc -3'
miRNA:   3'- aUGCUGgagCGCGCgCUCCGC-UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 8578 0.73 0.189482
Target:  5'- cGCGGCCU-GCGCGaCGAaGCGAcGGCg -3'
miRNA:   3'- aUGCUGGAgCGCGC-GCUcCGCUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 29453 0.73 0.189482
Target:  5'- cUGCGGCagaggCGCagguCGcCGAGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGga---GCGc---GC-GCUCCGCUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.