miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 5' -50.7 NC_005262.1 + 61436 1.13 0.002418
Target:  5'- aGGAAUUCCACGUCGCGAAGAAGGCGGc -3'
miRNA:   3'- -CCUUAAGGUGCAGCGCUUCUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 63 0.79 0.370738
Target:  5'- gGGGAggCCGCGgcUCGCGAAGAAGuCGGc -3'
miRNA:   3'- -CCUUaaGGUGC--AGCGCUUCUUCcGCC- -5'
24106 5' -50.7 NC_005262.1 + 27850 0.75 0.548512
Target:  5'- aGGugcugCCGCGUCGCaAGGAcGGCGGc -3'
miRNA:   3'- -CCuuaa-GGUGCAGCGcUUCUuCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 60126 0.74 0.592078
Target:  5'- aGGGcg-CCAgCGUCGCGgcGAAGGCa- -3'
miRNA:   3'- -CCUuaaGGU-GCAGCGCuuCUUCCGcc -5'
24106 5' -50.7 NC_005262.1 + 63318 0.74 0.592078
Target:  5'- uGGAAcacgcgcgCCGCGUCGcCGAGGucaacgcccucAAGGCGGa -3'
miRNA:   3'- -CCUUaa------GGUGCAGC-GCUUC-----------UUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 201 0.74 0.614098
Target:  5'- ----gUCCACGcCgGCGggGgcGGCGGa -3'
miRNA:   3'- ccuuaAGGUGCaG-CGCuuCuuCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 8278 0.74 0.614098
Target:  5'- aGGAAgcugcCCGCGUCGCucGcGAGGCGGc -3'
miRNA:   3'- -CCUUaa---GGUGCAGCGcuUcUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 35892 0.73 0.669251
Target:  5'- ----gUUCACGUCGgacagguacuUGAGGAGGGCGGu -3'
miRNA:   3'- ccuuaAGGUGCAGC----------GCUUCUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 32312 0.72 0.73414
Target:  5'- cGGAcgUCgACG--GCGAGGucGGCGGa -3'
miRNA:   3'- -CCUuaAGgUGCagCGCUUCuuCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 58196 0.71 0.744662
Target:  5'- ---uUUCCGCGUCGCcugcGGAGAGcGGCGc -3'
miRNA:   3'- ccuuAAGGUGCAGCG----CUUCUU-CCGCc -5'
24106 5' -50.7 NC_005262.1 + 20237 0.71 0.795315
Target:  5'- -----cCCACGUcugCGCGAGGAauccggacggcAGGCGGc -3'
miRNA:   3'- ccuuaaGGUGCA---GCGCUUCU-----------UCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 25532 0.71 0.795315
Target:  5'- ----aUCCGCGUCGCGAcGuccgugcgcGGCGGc -3'
miRNA:   3'- ccuuaAGGUGCAGCGCUuCuu-------CCGCC- -5'
24106 5' -50.7 NC_005262.1 + 22823 0.7 0.814454
Target:  5'- ----cUCCGCGacuacuUCGCGgcGAAGGCGc -3'
miRNA:   3'- ccuuaAGGUGC------AGCGCuuCUUCCGCc -5'
24106 5' -50.7 NC_005262.1 + 16415 0.7 0.832823
Target:  5'- cGGGAUUCUGCGcCGCGAGGcgcAAGGa-- -3'
miRNA:   3'- -CCUUAAGGUGCaGCGCUUC---UUCCgcc -5'
24106 5' -50.7 NC_005262.1 + 62862 0.69 0.874872
Target:  5'- aGGAUggCACGcCGUGAAGAuGGGCGa -3'
miRNA:   3'- cCUUAagGUGCaGCGCUUCU-UCCGCc -5'
24106 5' -50.7 NC_005262.1 + 21224 0.69 0.874872
Target:  5'- aGGAGUUUCuuGUCGaccuGAAcggcacGAAGGCGGc -3'
miRNA:   3'- -CCUUAAGGugCAGCg---CUU------CUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 51275 0.69 0.882553
Target:  5'- uGGAGgcgaUCGCGUCGCGcggcaucuGAAGcGCGGu -3'
miRNA:   3'- -CCUUaa--GGUGCAGCGCuu------CUUC-CGCC- -5'
24106 5' -50.7 NC_005262.1 + 62117 0.69 0.882553
Target:  5'- -----aCCGCGUCGCGGAuGAacgacgacuuugAGGCGa -3'
miRNA:   3'- ccuuaaGGUGCAGCGCUU-CU------------UCCGCc -5'
24106 5' -50.7 NC_005262.1 + 61408 0.68 0.889975
Target:  5'- -----cUCGCG-CGCGAGgcGAAGGCGGc -3'
miRNA:   3'- ccuuaaGGUGCaGCGCUU--CUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 61652 0.68 0.889975
Target:  5'- aGGAAgugcuguaCCGCGgCGCGcuGGAGGCGu -3'
miRNA:   3'- -CCUUaa------GGUGCaGCGCuuCUUCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.