miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 5' -50.7 NC_005262.1 + 63 0.79 0.370738
Target:  5'- gGGGAggCCGCGgcUCGCGAAGAAGuCGGc -3'
miRNA:   3'- -CCUUaaGGUGC--AGCGCUUCUUCcGCC- -5'
24106 5' -50.7 NC_005262.1 + 201 0.74 0.614098
Target:  5'- ----gUCCACGcCgGCGggGgcGGCGGa -3'
miRNA:   3'- ccuuaAGGUGCaG-CGCuuCuuCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 1205 0.67 0.923044
Target:  5'- -----aCCACaUCGUGuagcAGAAGGCGGc -3'
miRNA:   3'- ccuuaaGGUGcAGCGCu---UCUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 8268 0.66 0.953613
Target:  5'- -----gCUGCGUCGCGAAGucGAGuuuGCGGa -3'
miRNA:   3'- ccuuaaGGUGCAGCGCUUC--UUC---CGCC- -5'
24106 5' -50.7 NC_005262.1 + 8278 0.74 0.614098
Target:  5'- aGGAAgcugcCCGCGUCGCucGcGAGGCGGc -3'
miRNA:   3'- -CCUUaa---GGUGCAGCGcuUcUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 10988 0.66 0.960503
Target:  5'- gGGAAcgCCG-GUCGCGcucgcacggcugacGAGcGAGGCGGc -3'
miRNA:   3'- -CCUUaaGGUgCAGCGC--------------UUC-UUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 12541 0.66 0.953613
Target:  5'- ----cUCCAUGUUGCGGcggcAGGucgcGGCGGc -3'
miRNA:   3'- ccuuaAGGUGCAGCGCU----UCUu---CCGCC- -5'
24106 5' -50.7 NC_005262.1 + 14157 0.68 0.91698
Target:  5'- cGGGAUugUCCGcCG-CGCcGAGGAGuGCGGc -3'
miRNA:   3'- -CCUUA--AGGU-GCaGCGcUUCUUC-CGCC- -5'
24106 5' -50.7 NC_005262.1 + 14289 0.66 0.96527
Target:  5'- cGAAcuguaGCGUUGCGuggacGGGAGGGCGGc -3'
miRNA:   3'- cCUUaagg-UGCAGCGC-----UUCUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 16415 0.7 0.832823
Target:  5'- cGGGAUUCUGCGcCGCGAGGcgcAAGGa-- -3'
miRNA:   3'- -CCUUAAGGUGCaGCGCUUC---UUCCgcc -5'
24106 5' -50.7 NC_005262.1 + 16814 0.67 0.944522
Target:  5'- uGGAGUUCCugcACGacagcCGCGAcuucguGAAGGuCGGu -3'
miRNA:   3'- -CCUUAAGG---UGCa----GCGCUu-----CUUCC-GCC- -5'
24106 5' -50.7 NC_005262.1 + 17141 0.67 0.939568
Target:  5'- aGAAcgCgCGCGUCGCaaucGAGAAGGcCGGc -3'
miRNA:   3'- cCUUaaG-GUGCAGCGc---UUCUUCC-GCC- -5'
24106 5' -50.7 NC_005262.1 + 20237 0.71 0.795315
Target:  5'- -----cCCACGUcugCGCGAGGAauccggacggcAGGCGGc -3'
miRNA:   3'- ccuuaaGGUGCA---GCGCUUCU-----------UCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 21224 0.69 0.874872
Target:  5'- aGGAGUUUCuuGUCGaccuGAAcggcacGAAGGCGGc -3'
miRNA:   3'- -CCUUAAGGugCAGCg---CUU------CUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 22361 0.67 0.923044
Target:  5'- ----aUCCGCGUgGUGcGGAGGGUGu -3'
miRNA:   3'- ccuuaAGGUGCAgCGCuUCUUCCGCc -5'
24106 5' -50.7 NC_005262.1 + 22823 0.7 0.814454
Target:  5'- ----cUCCGCGacuacuUCGCGgcGAAGGCGc -3'
miRNA:   3'- ccuuaAGGUGC------AGCGCuuCUUCCGCc -5'
24106 5' -50.7 NC_005262.1 + 25532 0.71 0.795315
Target:  5'- ----aUCCGCGUCGCGAcGuccgugcgcGGCGGc -3'
miRNA:   3'- ccuuaAGGUGCAGCGCUuCuu-------CCGCC- -5'
24106 5' -50.7 NC_005262.1 + 26188 0.66 0.961641
Target:  5'- uGGAAUUUCAgGaUGuCGAcaGAGGCGGu -3'
miRNA:   3'- -CCUUAAGGUgCaGC-GCUucUUCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 27850 0.75 0.548512
Target:  5'- aGGugcugCCGCGUCGCaAGGAcGGCGGc -3'
miRNA:   3'- -CCuuaa-GGUGCAGCGcUUCUuCCGCC- -5'
24106 5' -50.7 NC_005262.1 + 28959 0.66 0.96527
Target:  5'- -----cUCGCG-CGCGAGGAAGuCGGg -3'
miRNA:   3'- ccuuaaGGUGCaGCGCUUCUUCcGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.