miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 3' -56.7 NC_005262.1 + 7289 0.7 0.475771
Target:  5'- cGCCgauucgagCGGCacguucucGCgCGAGUacgGCCCGGACAGa -3'
miRNA:   3'- -CGGa-------GCCG--------CGaGCUCA---UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 41604 0.69 0.515971
Target:  5'- aCCUUGGCGCUCaGGGcAgCgGAACGGu -3'
miRNA:   3'- cGGAGCCGCGAG-CUCaUgGgCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 56118 0.69 0.536582
Target:  5'- cGUUUCGucgacccgaccGCGC-CGAGcgACCCGAACAGc -3'
miRNA:   3'- -CGGAGC-----------CGCGaGCUCa-UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 2828 0.68 0.568004
Target:  5'- cGCCUCGaccucguuugcGCGCUgGcGUGCCCGcACGa -3'
miRNA:   3'- -CGGAGC-----------CGCGAgCuCAUGGGCuUGUc -5'
24107 3' -56.7 NC_005262.1 + 48400 0.68 0.58921
Target:  5'- cGCCUCGcugaaGCGCggCGAaauCCCGAACAc -3'
miRNA:   3'- -CGGAGC-----CGCGa-GCUcauGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 30502 0.68 0.599869
Target:  5'- gGCUUCGGCGCcCGGcGUGCgCGcgauGCGGu -3'
miRNA:   3'- -CGGAGCCGCGaGCU-CAUGgGCu---UGUC- -5'
24107 3' -56.7 NC_005262.1 + 39895 0.68 0.566948
Target:  5'- cGCCUCGGCG-UCGAu--CCUGAcacgguaGCAGg -3'
miRNA:   3'- -CGGAGCCGCgAGCUcauGGGCU-------UGUC- -5'
24107 3' -56.7 NC_005262.1 + 48691 0.69 0.536582
Target:  5'- cGCCUUcagGGCGUcggguuUCGAGUugccuccgGCCCGAgGCGGg -3'
miRNA:   3'- -CGGAG---CCGCG------AGCUCA--------UGGGCU-UGUC- -5'
24107 3' -56.7 NC_005262.1 + 15715 0.69 0.505785
Target:  5'- cGCgUCGGCGC-CGGGcgGCUCGucgcGGCAGg -3'
miRNA:   3'- -CGgAGCCGCGaGCUCa-UGGGC----UUGUC- -5'
24107 3' -56.7 NC_005262.1 + 43037 0.69 0.495687
Target:  5'- aUCUCguGGCGCUgGGGUucgaCCGGGCAGg -3'
miRNA:   3'- cGGAG--CCGCGAgCUCAug--GGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 33505 0.7 0.48568
Target:  5'- gGCCUUGucgacagcGCGCUCGAuUGCCCGcuCGGc -3'
miRNA:   3'- -CGGAGC--------CGCGAGCUcAUGGGCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 9039 0.68 0.599869
Target:  5'- cGCCUCGGCG-UCGAcGUGcguuuucccuuCCUGAucGCGGa -3'
miRNA:   3'- -CGGAGCCGCgAGCU-CAU-----------GGGCU--UGUC- -5'
24107 3' -56.7 NC_005262.1 + 38889 0.68 0.599869
Target:  5'- uGCCUCGGCGUccUCcGGcUGgCCGAGCu- -3'
miRNA:   3'- -CGGAGCCGCG--AGcUC-AUgGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 22709 0.67 0.610553
Target:  5'- gGCCggCGGCGUUgaCGAgcGUGCCgGGACAc -3'
miRNA:   3'- -CGGa-GCCGCGA--GCU--CAUGGgCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 46026 0.67 0.621255
Target:  5'- uGCgCUCGGC-CUCGA--AUUCGAGCAGc -3'
miRNA:   3'- -CG-GAGCCGcGAGCUcaUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 59206 0.67 0.621255
Target:  5'- uCCUgCgGGCGCUCac--GCCCGAGCAGc -3'
miRNA:   3'- cGGA-G-CCGCGAGcucaUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 29565 0.67 0.621255
Target:  5'- -aCUCGGCGCccaugUCGAGcgugucGCCCGAagccgcgaucGCGGg -3'
miRNA:   3'- cgGAGCCGCG-----AGCUCa-----UGGGCU----------UGUC- -5'
24107 3' -56.7 NC_005262.1 + 31888 0.67 0.642678
Target:  5'- cGUC-CGGCGCgUCGAGcggguUGCCCGcgUAGc -3'
miRNA:   3'- -CGGaGCCGCG-AGCUC-----AUGGGCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 9594 0.66 0.695905
Target:  5'- cGgCUCgcgcgGGCGCUgGAGcacgcGCUCGGACAGg -3'
miRNA:   3'- -CgGAG-----CCGCGAgCUCa----UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 4685 0.79 0.122063
Target:  5'- cGCCUCGGCGCgguaguagUCGuAGUugCCGAGCu- -3'
miRNA:   3'- -CGGAGCCGCG--------AGC-UCAugGGCUUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.