miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 3' -56.7 NC_005262.1 + 33499 0.66 0.706416
Target:  5'- gGCCU-GaCGCUCGAGgACUgGAACGGc -3'
miRNA:   3'- -CGGAgCcGCGAGCUCaUGGgCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 48563 0.67 0.610553
Target:  5'- gGCCgcuacaaGGUGCUCGA---CCCGAACGa -3'
miRNA:   3'- -CGGag-----CCGCGAGCUcauGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 25803 0.67 0.621255
Target:  5'- gGCa--GGCGCcCGAGUACCgGAugGa -3'
miRNA:   3'- -CGgagCCGCGaGCUCAUGGgCUugUc -5'
24107 3' -56.7 NC_005262.1 + 36603 0.67 0.636251
Target:  5'- cGCUUCGGCGCaaaggggaaugcgguUCG-GUugCUGGAUGGc -3'
miRNA:   3'- -CGGAGCCGCG---------------AGCuCAugGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 57179 0.66 0.674719
Target:  5'- cCCUCGcCGCUCGuGUcgcucccgcucgACCCGGACc- -3'
miRNA:   3'- cGGAGCcGCGAGCuCA------------UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 26780 0.66 0.694851
Target:  5'- cGCUUCGGCacauggcggauucGCUUGAGgcGCCCGGccuuGCAu -3'
miRNA:   3'- -CGGAGCCG-------------CGAGCUCa-UGGGCU----UGUc -5'
24107 3' -56.7 NC_005262.1 + 4575 0.66 0.695905
Target:  5'- cGCCagcggCGGCGCUgcucgggcgUGAGcGCCCgcagGAACGGg -3'
miRNA:   3'- -CGGa----GCCGCGA---------GCUCaUGGG----CUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 6755 0.66 0.695905
Target:  5'- cGCCUCGuuGUGCUCGuGg--CCGGGCAc -3'
miRNA:   3'- -CGGAGC--CGCGAGCuCaugGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 19460 0.66 0.706416
Target:  5'- gGCCUCGaUGCUCaccgGAcGgcCCCGAAUAGg -3'
miRNA:   3'- -CGGAGCcGCGAG----CU-CauGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 3433 0.68 0.599869
Target:  5'- cGCUUCaGcGCGCUCGGGgaucaGCUCGAACc- -3'
miRNA:   3'- -CGGAG-C-CGCGAGCUCa----UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 48400 0.68 0.58921
Target:  5'- cGCCUCGcugaaGCGCggCGAaauCCCGAACAc -3'
miRNA:   3'- -CGGAGC-----CGCGa-GCUcauGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 2828 0.68 0.568004
Target:  5'- cGCCUCGaccucguuugcGCGCUgGcGUGCCCGcACGa -3'
miRNA:   3'- -CGGAGC-----------CGCGAgCuCAUGGGCuUGUc -5'
24107 3' -56.7 NC_005262.1 + 34473 0.74 0.261328
Target:  5'- aGCCUaCGGCGUUCGAGcacAUCCGcGCGGc -3'
miRNA:   3'- -CGGA-GCCGCGAGCUCa--UGGGCuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 11509 0.73 0.310224
Target:  5'- -gCUCGGCuGCaUCGuGUGCCUGAACAu -3'
miRNA:   3'- cgGAGCCG-CG-AGCuCAUGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 1353 0.71 0.418588
Target:  5'- cGCCUCGGUGg-CGAGauUGCCCccACAGg -3'
miRNA:   3'- -CGGAGCCGCgaGCUC--AUGGGcuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 60331 0.71 0.42783
Target:  5'- cGCCUaCGGCGCgcgCGGcUACCUGAaggACGGc -3'
miRNA:   3'- -CGGA-GCCGCGa--GCUcAUGGGCU---UGUC- -5'
24107 3' -56.7 NC_005262.1 + 58651 0.7 0.465964
Target:  5'- gGCCg-GGCGCgCGAGUucuacgaucaaGCCCGAGCc- -3'
miRNA:   3'- -CGGagCCGCGaGCUCA-----------UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 7289 0.7 0.475771
Target:  5'- cGCCgauucgagCGGCacguucucGCgCGAGUacgGCCCGGACAGa -3'
miRNA:   3'- -CGGa-------GCCG--------CGaGCUCA---UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 41604 0.69 0.515971
Target:  5'- aCCUUGGCGCUCaGGGcAgCgGAACGGu -3'
miRNA:   3'- cGGAGCCGCGAG-CUCaUgGgCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 56118 0.69 0.536582
Target:  5'- cGUUUCGucgacccgaccGCGC-CGAGcgACCCGAACAGc -3'
miRNA:   3'- -CGGAGC-----------CGCGaGCUCa-UGGGCUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.