miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 3' -56.7 NC_005262.1 + 61817 1.11 0.000709
Target:  5'- uGCCUCGGCGCUCGAGUACCCGAACAGg -3'
miRNA:   3'- -CGGAGCCGCGAGCUCAUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 4685 0.79 0.122063
Target:  5'- cGCCUCGGCGCgguaguagUCGuAGUugCCGAGCu- -3'
miRNA:   3'- -CGGAGCCGCG--------AGC-UCAugGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 8380 0.79 0.136069
Target:  5'- cGCCUccagcCGGCGCUCGAGcUGCUCGAuGCGGc -3'
miRNA:   3'- -CGGA-----GCCGCGAGCUC-AUGGGCU-UGUC- -5'
24107 3' -56.7 NC_005262.1 + 34473 0.74 0.261328
Target:  5'- aGCCUaCGGCGUUCGAGcacAUCCGcGCGGc -3'
miRNA:   3'- -CGGA-GCCGCGAGCUCa--UGGGCuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 46258 0.74 0.267909
Target:  5'- cGCCUCGcGCGCgacCGcGUGCCCGuGCAu -3'
miRNA:   3'- -CGGAGC-CGCGa--GCuCAUGGGCuUGUc -5'
24107 3' -56.7 NC_005262.1 + 11509 0.73 0.310224
Target:  5'- -gCUCGGCuGCaUCGuGUGCCUGAACAu -3'
miRNA:   3'- cgGAGCCG-CG-AGCuCAUGGGCUUGUc -5'
24107 3' -56.7 NC_005262.1 + 26815 0.73 0.317752
Target:  5'- uUCUUGGgGCUCGGGUcgauACCCGAuacgaGCAGc -3'
miRNA:   3'- cGGAGCCgCGAGCUCA----UGGGCU-----UGUC- -5'
24107 3' -56.7 NC_005262.1 + 9758 0.72 0.341155
Target:  5'- cGCC-CGuGCGCUCGAugGUGCUguaggCGAGCAGg -3'
miRNA:   3'- -CGGaGC-CGCGAGCU--CAUGG-----GCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 1941 0.72 0.374257
Target:  5'- cGCCUUGGCGCUgGGGauuuucaUCGGGCAGu -3'
miRNA:   3'- -CGGAGCCGCGAgCUCaug----GGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 1353 0.71 0.418588
Target:  5'- cGCCUCGGUGg-CGAGauUGCCCccACAGg -3'
miRNA:   3'- -CGGAGCCGCgaGCUC--AUGGGcuUGUC- -5'
24107 3' -56.7 NC_005262.1 + 21545 0.71 0.418588
Target:  5'- cGCCgcagugagcgCGGCGCUCGgcaucGGaACCgCGAGCGGg -3'
miRNA:   3'- -CGGa---------GCCGCGAGC-----UCaUGG-GCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 60331 0.71 0.42783
Target:  5'- cGCCUaCGGCGCgcgCGGcUACCUGAaggACGGc -3'
miRNA:   3'- -CGGA-GCCGCGa--GCUcAUGGGCU---UGUC- -5'
24107 3' -56.7 NC_005262.1 + 60391 0.71 0.42783
Target:  5'- cGgCUCGcCGuCUCGAuGUACCUGGACGGg -3'
miRNA:   3'- -CgGAGCcGC-GAGCU-CAUGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 11630 0.7 0.446671
Target:  5'- cCCUCGGCG-UCGAG-GCCgGggUAGu -3'
miRNA:   3'- cGGAGCCGCgAGCUCaUGGgCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 58651 0.7 0.465964
Target:  5'- gGCCg-GGCGCgCGAGUucuacgaucaaGCCCGAGCc- -3'
miRNA:   3'- -CGGagCCGCGaGCUCA-----------UGGGCUUGuc -5'
24107 3' -56.7 NC_005262.1 + 7289 0.7 0.475771
Target:  5'- cGCCgauucgagCGGCacguucucGCgCGAGUacgGCCCGGACAGa -3'
miRNA:   3'- -CGGa-------GCCG--------CGaGCUCA---UGGGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 33505 0.7 0.48568
Target:  5'- gGCCUUGucgacagcGCGCUCGAuUGCCCGcuCGGc -3'
miRNA:   3'- -CGGAGC--------CGCGAGCUcAUGGGCuuGUC- -5'
24107 3' -56.7 NC_005262.1 + 43037 0.69 0.495687
Target:  5'- aUCUCguGGCGCUgGGGUucgaCCGGGCAGg -3'
miRNA:   3'- cGGAG--CCGCGAgCUCAug--GGCUUGUC- -5'
24107 3' -56.7 NC_005262.1 + 15715 0.69 0.505785
Target:  5'- cGCgUCGGCGC-CGGGcgGCUCGucgcGGCAGg -3'
miRNA:   3'- -CGgAGCCGCGaGCUCa-UGGGC----UUGUC- -5'
24107 3' -56.7 NC_005262.1 + 41604 0.69 0.515971
Target:  5'- aCCUUGGCGCUCaGGGcAgCgGAACGGu -3'
miRNA:   3'- cGGAGCCGCGAG-CUCaUgGgCUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.