Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24107 | 5' | -53.1 | NC_005262.1 | + | 47280 | 0.67 | 0.816117 |
Target: 5'- uGUCCGggGucag-CCCCAGCGCa--- -3' miRNA: 3'- -CGGGCuaCuuuuaGGGGUCGCGguuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 48076 | 0.67 | 0.8254 |
Target: 5'- uGCCgCGAcGAGccg-CCCGGCGCCGAc -3' miRNA: 3'- -CGG-GCUaCUUuuagGGGUCGCGGUUc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 49828 | 0.67 | 0.796972 |
Target: 5'- cGCgCGAUGGAGcgCgcgaauggCCCGGUGCCGGc -3' miRNA: 3'- -CGgGCUACUUUuaG--------GGGUCGCGGUUc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 50001 | 0.68 | 0.73571 |
Target: 5'- -gCCGAUGAAGccgCgCCGGCGCCc-- -3' miRNA: 3'- cgGGCUACUUUua-GgGGUCGCGGuuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 51841 | 0.67 | 0.8254 |
Target: 5'- cGCCauCGccGucGAUCCCCAGCGCg--- -3' miRNA: 3'- -CGG--GCuaCuuUUAGGGGUCGCGguuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 54192 | 0.66 | 0.865304 |
Target: 5'- uGUCCGAgcgcgugCUCCAGCGCCc-- -3' miRNA: 3'- -CGGGCUacuuuuaGGGGUCGCGGuuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 54645 | 0.66 | 0.842462 |
Target: 5'- cGCCgGGUGAuccgcauUCcgaccggCCCGGCGCCGGu -3' miRNA: 3'- -CGGgCUACUuuu----AG-------GGGUCGCGGUUc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 61851 | 1.1 | 0.001654 |
Target: 5'- uGCCCGAUGAAAAUCCCCAGCGCCAAGc -3' miRNA: 3'- -CGGGCUACUUUUAGGGGUCGCGGUUC- -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 63243 | 0.75 | 0.362214 |
Target: 5'- aCCCG-UGGGcAAUCCUCGGCGCCAu- -3' miRNA: 3'- cGGGCuACUU-UUAGGGGUCGCGGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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