Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24107 | 5' | -53.1 | NC_005262.1 | + | 198 | 0.7 | 0.626376 |
Target: 5'- -gCCGGUGAcGAUCCgCAGCGCg--- -3' miRNA: 3'- cgGGCUACUuUUAGGgGUCGCGguuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 3029 | 0.66 | 0.843339 |
Target: 5'- uCCCGAagaUGAAGuucuucgagcgcGUCuCCCAGCcuucGCCGAGc -3' miRNA: 3'- cGGGCU---ACUUU------------UAG-GGGUCG----CGGUUC- -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 3107 | 0.72 | 0.53866 |
Target: 5'- cGCCCGc-GAAGAagCCCAGCGUCGc- -3' miRNA: 3'- -CGGGCuaCUUUUagGGGUCGCGGUuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 3820 | 0.72 | 0.506758 |
Target: 5'- gGCCCGGagGAAGGUgCCgAGCGCCc-- -3' miRNA: 3'- -CGGGCUa-CUUUUAgGGgUCGCGGuuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 8593 | 0.69 | 0.670644 |
Target: 5'- uCCCGAaGAAGAUCgaCAGCGUUAAGu -3' miRNA: 3'- cGGGCUaCUUUUAGggGUCGCGGUUC- -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 9148 | 0.67 | 0.796972 |
Target: 5'- gGCCgGucgGAAugcgGAUCaCCCGGCGCCu-- -3' miRNA: 3'- -CGGgCua-CUU----UUAG-GGGUCGCGGuuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 13604 | 0.7 | 0.648541 |
Target: 5'- cGCUgaGAUcGAGAAauUCCCUAGCGCCGu- -3' miRNA: 3'- -CGGg-CUA-CUUUU--AGGGGUCGCGGUuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 13880 | 0.69 | 0.703495 |
Target: 5'- cGUCUGG-GAAAacGUCCCCGGCGUCc-- -3' miRNA: 3'- -CGGGCUaCUUU--UAGGGGUCGCGGuuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 14152 | 0.7 | 0.648541 |
Target: 5'- uGCgCCGG-GAuuGUCCgCC-GCGCCGAGg -3' miRNA: 3'- -CG-GGCUaCUuuUAGG-GGuCGCGGUUC- -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 16106 | 0.68 | 0.746252 |
Target: 5'- gGCCUGAaGGAcuUCCUCGGCGCg--- -3' miRNA: 3'- -CGGGCUaCUUuuAGGGGUCGCGguuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 20755 | 0.81 | 0.166507 |
Target: 5'- uGCCCGGUcGAA---CCCCAGCGCCAc- -3' miRNA: 3'- -CGGGCUA-CUUuuaGGGGUCGCGGUuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 21262 | 0.67 | 0.8254 |
Target: 5'- aUCCGAgcggg--CUUCAGCGCCAAGa -3' miRNA: 3'- cGGGCUacuuuuaGGGGUCGCGGUUC- -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 24449 | 0.69 | 0.714319 |
Target: 5'- uGCCgGGUuGAAAUUCCCAgaGUGCCAGa -3' miRNA: 3'- -CGGgCUAcUUUUAGGGGU--CGCGGUUc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 27261 | 0.69 | 0.681646 |
Target: 5'- cGCCCGAU---AAUCCCagucgccGCGCCGAc -3' miRNA: 3'- -CGGGCUAcuuUUAGGGgu-----CGCGGUUc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 28262 | 0.67 | 0.816117 |
Target: 5'- cGCUCGAUGAAcagcGUCacggCCGGCGCUg-- -3' miRNA: 3'- -CGGGCUACUUu---UAGg---GGUCGCGGuuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 42509 | 0.67 | 0.816117 |
Target: 5'- aGCCgCGA-GGAAAUCUCCuGCGCa--- -3' miRNA: 3'- -CGG-GCUaCUUUUAGGGGuCGCGguuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 44007 | 0.66 | 0.863672 |
Target: 5'- cGCCCGAUGugcgacgaCCAcGCGCaCGAGa -3' miRNA: 3'- -CGGGCUACuuuuagg-GGU-CGCG-GUUC- -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 44340 | 0.7 | 0.637461 |
Target: 5'- cGUCCGGUGAGcAUCgaggccaacgCCCAGCGCUucAGa -3' miRNA: 3'- -CGGGCUACUUuUAG----------GGGUCGCGGu-UC- -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 44863 | 0.68 | 0.746252 |
Target: 5'- gGCCCGc-GAGGA-CCgCCAGCGCUAc- -3' miRNA: 3'- -CGGGCuaCUUUUaGG-GGUCGCGGUuc -5' |
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24107 | 5' | -53.1 | NC_005262.1 | + | 45097 | 0.66 | 0.851975 |
Target: 5'- cGCCUGgcGGAAGUCCgugCCAGCcgauauGCgCAAGg -3' miRNA: 3'- -CGGGCuaCUUUUAGG---GGUCG------CG-GUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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