miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24107 5' -53.1 NC_005262.1 + 61851 1.1 0.001654
Target:  5'- uGCCCGAUGAAAAUCCCCAGCGCCAAGc -3'
miRNA:   3'- -CGGGCUACUUUUAGGGGUCGCGGUUC- -5'
24107 5' -53.1 NC_005262.1 + 20755 0.81 0.166507
Target:  5'- uGCCCGGUcGAA---CCCCAGCGCCAc- -3'
miRNA:   3'- -CGGGCUA-CUUuuaGGGGUCGCGGUuc -5'
24107 5' -53.1 NC_005262.1 + 63243 0.75 0.362214
Target:  5'- aCCCG-UGGGcAAUCCUCGGCGCCAu- -3'
miRNA:   3'- cGGGCuACUU-UUAGGGGUCGCGGUuc -5'
24107 5' -53.1 NC_005262.1 + 3820 0.72 0.506758
Target:  5'- gGCCCGGagGAAGGUgCCgAGCGCCc-- -3'
miRNA:   3'- -CGGGCUa-CUUUUAgGGgUCGCGGuuc -5'
24107 5' -53.1 NC_005262.1 + 3107 0.72 0.53866
Target:  5'- cGCCCGc-GAAGAagCCCAGCGUCGc- -3'
miRNA:   3'- -CGGGCuaCUUUUagGGGUCGCGGUuc -5'
24107 5' -53.1 NC_005262.1 + 198 0.7 0.626376
Target:  5'- -gCCGGUGAcGAUCCgCAGCGCg--- -3'
miRNA:   3'- cgGGCUACUuUUAGGgGUCGCGguuc -5'
24107 5' -53.1 NC_005262.1 + 44340 0.7 0.637461
Target:  5'- cGUCCGGUGAGcAUCgaggccaacgCCCAGCGCUucAGa -3'
miRNA:   3'- -CGGGCUACUUuUAG----------GGGUCGCGGu-UC- -5'
24107 5' -53.1 NC_005262.1 + 13604 0.7 0.648541
Target:  5'- cGCUgaGAUcGAGAAauUCCCUAGCGCCGu- -3'
miRNA:   3'- -CGGg-CUA-CUUUU--AGGGGUCGCGGUuc -5'
24107 5' -53.1 NC_005262.1 + 14152 0.7 0.648541
Target:  5'- uGCgCCGG-GAuuGUCCgCC-GCGCCGAGg -3'
miRNA:   3'- -CG-GGCUaCUuuUAGG-GGuCGCGGUUC- -5'
24107 5' -53.1 NC_005262.1 + 8593 0.69 0.670644
Target:  5'- uCCCGAaGAAGAUCgaCAGCGUUAAGu -3'
miRNA:   3'- cGGGCUaCUUUUAGggGUCGCGGUUC- -5'
24107 5' -53.1 NC_005262.1 + 27261 0.69 0.681646
Target:  5'- cGCCCGAU---AAUCCCagucgccGCGCCGAc -3'
miRNA:   3'- -CGGGCUAcuuUUAGGGgu-----CGCGGUUc -5'
24107 5' -53.1 NC_005262.1 + 13880 0.69 0.703495
Target:  5'- cGUCUGG-GAAAacGUCCCCGGCGUCc-- -3'
miRNA:   3'- -CGGGCUaCUUU--UAGGGGUCGCGGuuc -5'
24107 5' -53.1 NC_005262.1 + 24449 0.69 0.714319
Target:  5'- uGCCgGGUuGAAAUUCCCAgaGUGCCAGa -3'
miRNA:   3'- -CGGgCUAcUUUUAGGGGU--CGCGGUUc -5'
24107 5' -53.1 NC_005262.1 + 50001 0.68 0.73571
Target:  5'- -gCCGAUGAAGccgCgCCGGCGCCc-- -3'
miRNA:   3'- cgGGCUACUUUua-GgGGUCGCGGuuc -5'
24107 5' -53.1 NC_005262.1 + 16106 0.68 0.746252
Target:  5'- gGCCUGAaGGAcuUCCUCGGCGCg--- -3'
miRNA:   3'- -CGGGCUaCUUuuAGGGGUCGCGguuc -5'
24107 5' -53.1 NC_005262.1 + 44863 0.68 0.746252
Target:  5'- gGCCCGc-GAGGA-CCgCCAGCGCUAc- -3'
miRNA:   3'- -CGGGCuaCUUUUaGG-GGUCGCGGUuc -5'
24107 5' -53.1 NC_005262.1 + 9148 0.67 0.796972
Target:  5'- gGCCgGucgGAAugcgGAUCaCCCGGCGCCu-- -3'
miRNA:   3'- -CGGgCua-CUU----UUAG-GGGUCGCGGuuc -5'
24107 5' -53.1 NC_005262.1 + 49828 0.67 0.796972
Target:  5'- cGCgCGAUGGAGcgCgcgaauggCCCGGUGCCGGc -3'
miRNA:   3'- -CGgGCUACUUUuaG--------GGGUCGCGGUUc -5'
24107 5' -53.1 NC_005262.1 + 28262 0.67 0.816117
Target:  5'- cGCUCGAUGAAcagcGUCacggCCGGCGCUg-- -3'
miRNA:   3'- -CGGGCUACUUu---UAGg---GGUCGCGGuuc -5'
24107 5' -53.1 NC_005262.1 + 47280 0.67 0.816117
Target:  5'- uGUCCGggGucag-CCCCAGCGCa--- -3'
miRNA:   3'- -CGGGCuaCuuuuaGGGGUCGCGguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.