miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 13677 0.68 0.489872
Target:  5'- uCGGUCAGCGagCGCucGGCcggcuucuguucgcgCGGCGCGg -3'
miRNA:   3'- -GCCAGUCGCg-GCG--UCGuaa------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 59210 0.68 0.487882
Target:  5'- gCGGgcgcucacgcccgagCAGCGCCGCcGC---UGGCGCGa -3'
miRNA:   3'- -GCCa--------------GUCGCGGCGuCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 24978 0.68 0.486889
Target:  5'- aGGcCGGCuugGUCgagGCGGCAUUCGaGCGCGg -3'
miRNA:   3'- gCCaGUCG---CGG---CGUCGUAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 40600 0.68 0.486889
Target:  5'- aCGGUggcgCAGaUGCCGCAGCAUaaucaCGGCGu- -3'
miRNA:   3'- -GCCA----GUC-GCGGCGUCGUAa----GCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 43590 0.68 0.486889
Target:  5'- aGGUCAGCGCgaaCGCAGauaUCGcGCAgGu -3'
miRNA:   3'- gCCAGUCGCG---GCGUCguaAGC-CGUgC- -5'
24108 3' -58.5 NC_005262.1 + 32175 0.68 0.486889
Target:  5'- aGGUCGGCuuGCCGC-GCAggu-GCACGg -3'
miRNA:   3'- gCCAGUCG--CGGCGuCGUaagcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13430 0.68 0.477009
Target:  5'- aCGGUCGacgaauGCGCCGCucGCggUCGuCGCGg -3'
miRNA:   3'- -GCCAGU------CGCGGCGu-CGuaAGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 56600 0.68 0.473085
Target:  5'- cCGGUCuuacaaugcaaucGCGCCGCAauuacGCGguagCGGCAUGc -3'
miRNA:   3'- -GCCAGu------------CGCGGCGU-----CGUaa--GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 21768 0.68 0.46723
Target:  5'- aCGcGUCAaCGUCGCcaAGCAUcUCGGCAUGc -3'
miRNA:   3'- -GC-CAGUcGCGGCG--UCGUA-AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 48956 0.68 0.466257
Target:  5'- uGGUCGccagcauGaCGCCGCAgauGCAggCGGCGCu -3'
miRNA:   3'- gCCAGU-------C-GCGGCGU---CGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 35656 0.68 0.465286
Target:  5'- gGGcuacUCGGUGCCGCAGCucgugcucacgUCgagcgGGCACGg -3'
miRNA:   3'- gCC----AGUCGCGGCGUCGua---------AG-----CCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 61785 0.68 0.457555
Target:  5'- aCGaagCAGCGCCGUGGCGUggagcaugCGaGCACa -3'
miRNA:   3'- -GCca-GUCGCGGCGUCGUAa-------GC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 34006 0.68 0.457555
Target:  5'- aGGUUgcuggGGUGCCGCGcCGUcCGGCACu -3'
miRNA:   3'- gCCAG-----UCGCGGCGUcGUAaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 4687 0.68 0.457555
Target:  5'- cCGGaUCGG-GCCGCGGCAUccagUCGuuGCGCa -3'
miRNA:   3'- -GCC-AGUCgCGGCGUCGUA----AGC--CGUGc -5'
24108 3' -58.5 NC_005262.1 + 4974 0.68 0.455632
Target:  5'- ----aAGCGCCGCAGCAgccagccuucaCGGCGCc -3'
miRNA:   3'- gccagUCGCGGCGUCGUaa---------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 50406 0.68 0.454673
Target:  5'- gCGGcgaUCAGCGCCGCGGagcgcgagggccgCGuGCACGu -3'
miRNA:   3'- -GCC---AGUCGCGGCGUCguaa---------GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 21686 0.68 0.447988
Target:  5'- gCGG-CGGCGCCGCGcuGCuguacgCGgGCACGc -3'
miRNA:   3'- -GCCaGUCGCGGCGU--CGuaa---GC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 52388 0.68 0.438533
Target:  5'- gCGGccCGGCGCggCGCGGC-UUCGGCGUGg -3'
miRNA:   3'- -GCCa-GUCGCG--GCGUCGuAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 35840 0.68 0.438533
Target:  5'- gGcGUCGGCGCCGCGaccGCccagauGUUUGuGCGCGg -3'
miRNA:   3'- gC-CAGUCGCGGCGU---CG------UAAGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 36528 0.69 0.429193
Target:  5'- aCGGUCGGCGCgGCgacuGGgAUUaucgGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGgCG----UCgUAAg---CCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.