Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24108 | 3' | -58.5 | NC_005262.1 | + | 12325 | 0.7 | 0.342665 |
Target: 5'- gCGGcUC-GUGCCGCAGCGcgCGGCGg- -3' miRNA: 3'- -GCC-AGuCGCGGCGUCGUaaGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12428 | 0.73 | 0.226067 |
Target: 5'- uGGcCGGCGUCGCGGa---CGGCGCGg -3' miRNA: 3'- gCCaGUCGCGGCGUCguaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12502 | 0.66 | 0.590056 |
Target: 5'- uGGUCgAGCGgcaugCGCAGCAgccggCGGC-CGg -3' miRNA: 3'- gCCAG-UCGCg----GCGUCGUaa---GCCGuGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 12805 | 0.67 | 0.496865 |
Target: 5'- uGGgCGGCG-CGCAGC---CGGCGCGu -3' miRNA: 3'- gCCaGUCGCgGCGUCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 13142 | 0.67 | 0.517084 |
Target: 5'- aGGUCcgccGCGCgCGCuGCg--CGGCACa -3' miRNA: 3'- gCCAGu---CGCG-GCGuCGuaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 13430 | 0.68 | 0.477009 |
Target: 5'- aCGGUCGacgaauGCGCCGCucGCggUCGuCGCGg -3' miRNA: 3'- -GCCAGU------CGCGGCGu-CGuaAGCcGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 13677 | 0.68 | 0.489872 |
Target: 5'- uCGGUCAGCGagCGCucGGCcggcuucuguucgcgCGGCGCGg -3' miRNA: 3'- -GCCAGUCGCg-GCG--UCGuaa------------GCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 13722 | 0.67 | 0.517084 |
Target: 5'- uCGGUCGGCGCaGCGGCcUUCGuCucCGg -3' miRNA: 3'- -GCCAGUCGCGgCGUCGuAAGCcGu-GC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 13791 | 0.72 | 0.262857 |
Target: 5'- uCGGUgGGCGCCggcGCGGCuucaUCGGCGgGa -3' miRNA: 3'- -GCCAgUCGCGG---CGUCGua--AGCCGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 14003 | 0.69 | 0.384318 |
Target: 5'- cCGGaCGGUGCaGgGGCGUcCGGCGCGg -3' miRNA: 3'- -GCCaGUCGCGgCgUCGUAaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 14045 | 0.72 | 0.276159 |
Target: 5'- uCGGgcgCgGGCGCCGcCGGCGU-CGGUGCGg -3' miRNA: 3'- -GCCa--G-UCGCGGC-GUCGUAaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 14536 | 0.66 | 0.590056 |
Target: 5'- uGG-CAGUGCCGU-GCAUgcgcuggaUCGGCAgGc -3' miRNA: 3'- gCCaGUCGCGGCGuCGUA--------AGCCGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15095 | 0.71 | 0.31928 |
Target: 5'- aCGcGUCuuucuGCGgCGCGGCGUcCGGCugGa -3' miRNA: 3'- -GC-CAGu----CGCgGCGUCGUAaGCCGugC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15145 | 0.66 | 0.558438 |
Target: 5'- gCGGcCGGCGUCGag----UCGGCGCGg -3' miRNA: 3'- -GCCaGUCGCGGCgucguaAGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15176 | 0.69 | 0.401894 |
Target: 5'- aCGGcacgCAGCGCuaCGCGGCGUUCugcaaGGCgACGa -3' miRNA: 3'- -GCCa---GUCGCG--GCGUCGUAAG-----CCG-UGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 15714 | 0.7 | 0.334734 |
Target: 5'- gCGcGUCGGCGCCggGCGGCucgucgCGGCAgGu -3' miRNA: 3'- -GC-CAGUCGCGG--CGUCGuaa---GCCGUgC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 16051 | 0.71 | 0.326939 |
Target: 5'- gGGUU--CGCCGCGGCcggCGGCGCa -3' miRNA: 3'- gCCAGucGCGGCGUCGuaaGCCGUGc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 16083 | 0.66 | 0.600673 |
Target: 5'- aGG-CGGCgaGCCGCcGCc--CGGCGCGg -3' miRNA: 3'- gCCaGUCG--CGGCGuCGuaaGCCGUGC- -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 16352 | 0.79 | 0.091182 |
Target: 5'- uCGGcgcgcugaUCGGCGCCGCcGCGUUCGGCAa- -3' miRNA: 3'- -GCC--------AGUCGCGGCGuCGUAAGCCGUgc -5' |
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24108 | 3' | -58.5 | NC_005262.1 | + | 17262 | 0.69 | 0.401894 |
Target: 5'- gCGGcCGGCGCCGCgcugGGCug-CuGCGCGg -3' miRNA: 3'- -GCCaGUCGCGGCG----UCGuaaGcCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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