miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 1999 0.66 0.59961
Target:  5'- aGG-CAuGCGCCGCGcaggcgaaaacgcGCuggucggUCGGCGCGu -3'
miRNA:   3'- gCCaGU-CGCGGCGU-------------CGua-----AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 2155 0.73 0.226067
Target:  5'- uCGGUCAGCGCaucagCGCGGCuauugUCGG-ACGg -3'
miRNA:   3'- -GCCAGUCGCG-----GCGUCGua---AGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 2776 0.67 0.527317
Target:  5'- gCGGUUAGCagacgucucgGCgaGCGGCuugaugacggUCGGCACGg -3'
miRNA:   3'- -GCCAGUCG----------CGg-CGUCGua--------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 4687 0.68 0.457555
Target:  5'- cCGGaUCGG-GCCGCGGCAUccagUCGuuGCGCa -3'
miRNA:   3'- -GCC-AGUCgCGGCGUCGUA----AGC--CGUGc -5'
24108 3' -58.5 NC_005262.1 + 4974 0.68 0.455632
Target:  5'- ----aAGCGCCGCAGCAgccagccuucaCGGCGCc -3'
miRNA:   3'- gccagUCGCGGCGUCGUaa---------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 5062 0.7 0.350729
Target:  5'- gCGGgcaGGC-CCGCGGCgg-CGGCGCGu -3'
miRNA:   3'- -GCCag-UCGcGGCGUCGuaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 5084 0.67 0.527317
Target:  5'- gCGGUCAGCgccucgggcauGCCGcCAGCuugUUGcGCGCu -3'
miRNA:   3'- -GCCAGUCG-----------CGGC-GUCGua-AGC-CGUGc -5'
24108 3' -58.5 NC_005262.1 + 5138 0.67 0.517084
Target:  5'- aCGGgCGGCGCUGauccuGC--UCGGCGCGc -3'
miRNA:   3'- -GCCaGUCGCGGCgu---CGuaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 5176 0.72 0.262857
Target:  5'- aCGGcCGGCGUCGCGggcgcgggcGCGgcCGGCGCGa -3'
miRNA:   3'- -GCCaGUCGCGGCGU---------CGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 5590 0.69 0.419972
Target:  5'- aCGGgCGGCGCCGCucuccGCAggCGaCGCGg -3'
miRNA:   3'- -GCCaGUCGCGGCGu----CGUaaGCcGUGC- -5'
24108 3' -58.5 NC_005262.1 + 6367 0.72 0.276159
Target:  5'- gCGGaCGGUGCCGgAGCGUugUCGGC-CGc -3'
miRNA:   3'- -GCCaGUCGCGGCgUCGUA--AGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 7011 0.67 0.548
Target:  5'- ---aCAGCGCgGCGGC-UUCGGUggACGu -3'
miRNA:   3'- gccaGUCGCGgCGUCGuAAGCCG--UGC- -5'
24108 3' -58.5 NC_005262.1 + 7530 0.66 0.590056
Target:  5'- aGGuUCGGCGgCGCG----UCGGCGCGc -3'
miRNA:   3'- gCC-AGUCGCgGCGUcguaAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 8196 0.74 0.204038
Target:  5'- cCGGaaGGCGCCGCAGCGaugaUCcGCGCGg -3'
miRNA:   3'- -GCCagUCGCGGCGUCGUa---AGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 8956 0.69 0.429193
Target:  5'- cCGGUCGGCG-CGCuGCGUgUCGGUcCa -3'
miRNA:   3'- -GCCAGUCGCgGCGuCGUA-AGCCGuGc -5'
24108 3' -58.5 NC_005262.1 + 9301 0.69 0.429193
Target:  5'- uCGGUCGG-GCCcaGCGGC-UUCGGCuGCa -3'
miRNA:   3'- -GCCAGUCgCGG--CGUCGuAAGCCG-UGc -5'
24108 3' -58.5 NC_005262.1 + 9363 0.75 0.169959
Target:  5'- cCGGUCGGCGCgCGCGGCGgcCuGCGCc -3'
miRNA:   3'- -GCCAGUCGCG-GCGUCGUaaGcCGUGc -5'
24108 3' -58.5 NC_005262.1 + 10460 0.69 0.384318
Target:  5'- gCGGUCGGCGagGUAGCgg-CGcGCGCGg -3'
miRNA:   3'- -GCCAGUCGCggCGUCGuaaGC-CGUGC- -5'
24108 3' -58.5 NC_005262.1 + 10559 0.69 0.423646
Target:  5'- cCGGcCGcgcGCaGCCGCAGCGUaccgcggagcagcgCGGCGCGa -3'
miRNA:   3'- -GCCaGU---CG-CGGCGUCGUAa-------------GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 11902 0.8 0.081616
Target:  5'- gCGGUCGGUGCCGUucGGCGgcgUCGGCuCGg -3'
miRNA:   3'- -GCCAGUCGCGGCG--UCGUa--AGCCGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.