miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24108 3' -58.5 NC_005262.1 + 62747 1.08 0.000691
Target:  5'- gCGGUCAGCGCCGCAGCAUUCGGCACGu -3'
miRNA:   3'- -GCCAGUCGCGGCGUCGUAAGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 11902 0.8 0.081616
Target:  5'- gCGGUCGGUGCCGUucGGCGgcgUCGGCuCGg -3'
miRNA:   3'- -GCCAGUCGCGGCG--UCGUa--AGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 16352 0.79 0.091182
Target:  5'- uCGGcgcgcugaUCGGCGCCGCcGCGUUCGGCAa- -3'
miRNA:   3'- -GCC--------AGUCGCGGCGuCGUAAGCCGUgc -5'
24108 3' -58.5 NC_005262.1 + 24327 0.77 0.13367
Target:  5'- uGGUCGGCGCgaucgacaUGCGGCucugcgUCGGCGCGc -3'
miRNA:   3'- gCCAGUCGCG--------GCGUCGua----AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 56083 0.77 0.13367
Target:  5'- gCGGUCAGCGCaagauGCAGCucgaggaggCGGCGCa -3'
miRNA:   3'- -GCCAGUCGCGg----CGUCGuaa------GCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 9363 0.75 0.169959
Target:  5'- cCGGUCGGCGCgCGCGGCGgcCuGCGCc -3'
miRNA:   3'- -GCCAGUCGCG-GCGUCGUaaGcCGUGc -5'
24108 3' -58.5 NC_005262.1 + 32133 0.75 0.17914
Target:  5'- aCGGaCAuGCGCacCGCAGCGggCGGCACGu -3'
miRNA:   3'- -GCCaGU-CGCG--GCGUCGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 8196 0.74 0.204038
Target:  5'- cCGGaaGGCGCCGCAGCGaugaUCcGCGCGg -3'
miRNA:   3'- -GCCagUCGCGGCGUCGUa---AGcCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 12428 0.73 0.226067
Target:  5'- uGGcCGGCGUCGCGGa---CGGCGCGg -3'
miRNA:   3'- gCCaGUCGCGGCGUCguaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 2155 0.73 0.226067
Target:  5'- uCGGUCAGCGCaucagCGCGGCuauugUCGG-ACGg -3'
miRNA:   3'- -GCCAGUCGCG-----GCGUCGua---AGCCgUGC- -5'
24108 3' -58.5 NC_005262.1 + 60126 0.73 0.23782
Target:  5'- aGGgcgcCAGCGUCGCGGCGaa-GGCAUGg -3'
miRNA:   3'- gCCa---GUCGCGGCGUCGUaagCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 17545 0.73 0.23782
Target:  5'- gCGGUCGcGCGCgagGCGGCAgccgcggCGGCGCGc -3'
miRNA:   3'- -GCCAGU-CGCGg--CGUCGUaa-----GCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 35231 0.73 0.23782
Target:  5'- aGGUCGGCGgCGCgaucGGCAg-CGGCugGg -3'
miRNA:   3'- gCCAGUCGCgGCG----UCGUaaGCCGugC- -5'
24108 3' -58.5 NC_005262.1 + 58808 0.73 0.240232
Target:  5'- aCGuGaUCGGCGCCGUgaaGGCAUggcugcugcggcgcuUCGGCACGc -3'
miRNA:   3'- -GC-C-AGUCGCGGCG---UCGUA---------------AGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 13791 0.72 0.262857
Target:  5'- uCGGUgGGCGCCggcGCGGCuucaUCGGCGgGa -3'
miRNA:   3'- -GCCAgUCGCGG---CGUCGua--AGCCGUgC- -5'
24108 3' -58.5 NC_005262.1 + 5176 0.72 0.262857
Target:  5'- aCGGcCGGCGUCGCGggcgcgggcGCGgcCGGCGCGa -3'
miRNA:   3'- -GCCaGUCGCGGCGU---------CGUaaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 20716 0.72 0.267453
Target:  5'- cCGGUCAGgucgaugaugaagcUGCCGCGGCGcgCGGUGCc -3'
miRNA:   3'- -GCCAGUC--------------GCGGCGUCGUaaGCCGUGc -5'
24108 3' -58.5 NC_005262.1 + 6367 0.72 0.276159
Target:  5'- gCGGaCGGUGCCGgAGCGUugUCGGC-CGc -3'
miRNA:   3'- -GCCaGUCGCGGCgUCGUA--AGCCGuGC- -5'
24108 3' -58.5 NC_005262.1 + 14045 0.72 0.276159
Target:  5'- uCGGgcgCgGGCGCCGcCGGCGU-CGGUGCGg -3'
miRNA:   3'- -GCCa--G-UCGCGGC-GUCGUAaGCCGUGC- -5'
24108 3' -58.5 NC_005262.1 + 46697 0.71 0.289994
Target:  5'- -aGUCAGCGCCGCGcgcGCAguggacaagcCGGCGCa -3'
miRNA:   3'- gcCAGUCGCGGCGU---CGUaa--------GCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.