miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24109 5' -52.8 NC_005262.1 + 33312 0.71 0.643972
Target:  5'- ---cGAAGCCGU-CGAGUCGGACg-- -3'
miRNA:   3'- gguaCUUCGGCAgGCUCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 33578 0.66 0.86404
Target:  5'- gCCGUGAuGUCG-CCGuuGUCGAACUg- -3'
miRNA:   3'- -GGUACUuCGGCaGGCu-CGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 34809 0.67 0.811248
Target:  5'- gCCuc-AAGCCGUCCGAggauGCCGAucaGCUc- -3'
miRNA:   3'- -GGuacUUCGGCAGGCU----CGGCU---UGAac -5'
24109 5' -52.8 NC_005262.1 + 42077 0.75 0.404734
Target:  5'- gCCuUGAGGCCGUCCuuGCCGAuCUg- -3'
miRNA:   3'- -GGuACUUCGGCAGGcuCGGCUuGAac -5'
24109 5' -52.8 NC_005262.1 + 42368 0.67 0.83862
Target:  5'- aCCAgcucgcgGAcgucGGCCGUCgCGAGCuCGGACc-- -3'
miRNA:   3'- -GGUa------CU----UCGGCAG-GCUCG-GCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 43667 0.66 0.893809
Target:  5'- aCGUGGcgaccugaacgcaAGCCaagCCGGGCCGAAUUc- -3'
miRNA:   3'- gGUACU-------------UCGGca-GGCUCGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 47003 0.78 0.261135
Target:  5'- uCCAUGAGcucGCCGUCCGGGCUGAu---- -3'
miRNA:   3'- -GGUACUU---CGGCAGGCUCGGCUugaac -5'
24109 5' -52.8 NC_005262.1 + 56782 0.67 0.807464
Target:  5'- aCAUGAAGCUGgccggccugaaggCCGAcGUCGAGCg-- -3'
miRNA:   3'- gGUACUUCGGCa------------GGCU-CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 57337 0.66 0.894521
Target:  5'- gCGUcGAuGCCGgcgucucgCCgGAGCCGAACUa- -3'
miRNA:   3'- gGUA-CUuCGGCa-------GG-CUCGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 59051 0.66 0.894521
Target:  5'- uCCGUGgcGCCGgCagGAGCuCGAGCa-- -3'
miRNA:   3'- -GGUACuuCGGCaGg-CUCG-GCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 60299 0.66 0.87979
Target:  5'- aCCGU-AAGCCGaUCCGcGUCGGGCg-- -3'
miRNA:   3'- -GGUAcUUCGGC-AGGCuCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 60815 0.66 0.87979
Target:  5'- gCAcgGAGGCCGauugcCCGAuGCCGGGCa-- -3'
miRNA:   3'- gGUa-CUUCGGCa----GGCU-CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 61376 0.67 0.83862
Target:  5'- aCGUGAAGCCGcUgCGcAGCCGcuACUa- -3'
miRNA:   3'- gGUACUUCGGC-AgGC-UCGGCu-UGAac -5'
24109 5' -52.8 NC_005262.1 + 63618 1.12 0.001557
Target:  5'- aCCAUGAAGCCGUCCGAGCCGAACUUGa -3'
miRNA:   3'- -GGUACUUCGGCAGGCUCGGCUUGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.