miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24109 5' -52.8 NC_005262.1 + 3027 0.67 0.855798
Target:  5'- uCCGgcgGAAGCCGU-UGAGCCGGc---- -3'
miRNA:   3'- -GGUa--CUUCGGCAgGCUCGGCUugaac -5'
24109 5' -52.8 NC_005262.1 + 3955 0.67 0.847323
Target:  5'- aCGcGAucGCCGUuuGAGUCGAGCa-- -3'
miRNA:   3'- gGUaCUu-CGGCAggCUCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 4825 0.71 0.63296
Target:  5'- gCGUGAGGCCG-CCGgcGGCCG-GCUg- -3'
miRNA:   3'- gGUACUUCGGCaGGC--UCGGCuUGAac -5'
24109 5' -52.8 NC_005262.1 + 6717 0.67 0.829701
Target:  5'- uCCAUGAuGCCGggcCCGugcuuGUCGAACa-- -3'
miRNA:   3'- -GGUACUuCGGCa--GGCu----CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 8227 0.68 0.76201
Target:  5'- gCCAUG-AGCUGUCgGcgaagcucgaAGCCGAGCg-- -3'
miRNA:   3'- -GGUACuUCGGCAGgC----------UCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 9129 0.71 0.643972
Target:  5'- gCUAUGAGGaCCGgcgCCGGGCCGGu---- -3'
miRNA:   3'- -GGUACUUC-GGCa--GGCUCGGCUugaac -5'
24109 5' -52.8 NC_005262.1 + 9805 0.67 0.829701
Target:  5'- gCCGUGAAGgCGUCguaGGcaucGCCGAGCg-- -3'
miRNA:   3'- -GGUACUUCgGCAGg--CU----CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 11402 0.67 0.811248
Target:  5'- uCCAcgccGAAGCCGcgCCGcGCCGGGCc-- -3'
miRNA:   3'- -GGUa---CUUCGGCa-GGCuCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 12280 0.68 0.782183
Target:  5'- ---cGcGGCCGg-CGAGCCGAGCUUu -3'
miRNA:   3'- gguaCuUCGGCagGCUCGGCUUGAAc -5'
24109 5' -52.8 NC_005262.1 + 13982 0.67 0.811248
Target:  5'- uCCAUcgcGcGGCCGaUCGGGCCGGACg-- -3'
miRNA:   3'- -GGUA---CuUCGGCaGGCUCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 14882 0.73 0.513765
Target:  5'- uUCAgGAGGUCGUCCGAGCC---CUUGa -3'
miRNA:   3'- -GGUaCUUCGGCAGGCUCGGcuuGAAC- -5'
24109 5' -52.8 NC_005262.1 + 21782 0.66 0.887286
Target:  5'- -gGUGAGGCCGcccgaUUCGAGgCGGGCg-- -3'
miRNA:   3'- ggUACUUCGGC-----AGGCUCgGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 21877 0.71 0.643972
Target:  5'- --cUGAAGCCGaCCGcgcAGCCGGACg-- -3'
miRNA:   3'- gguACUUCGGCaGGC---UCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 23670 0.72 0.567206
Target:  5'- uCCGUGGAuGCCGcCCGAGCgGcGCgugUGg -3'
miRNA:   3'- -GGUACUU-CGGCaGGCUCGgCuUGa--AC- -5'
24109 5' -52.8 NC_005262.1 + 25568 0.66 0.887286
Target:  5'- aCCAgacgGcAGCCGUCUGcGCCGGGgUa- -3'
miRNA:   3'- -GGUa---CuUCGGCAGGCuCGGCUUgAac -5'
24109 5' -52.8 NC_005262.1 + 26780 0.68 0.76201
Target:  5'- gCCAUGAAccGCCG-CCGAuguccgucucGCCGAcguuCUUGg -3'
miRNA:   3'- -GGUACUU--CGGCaGGCU----------CGGCUu---GAAC- -5'
24109 5' -52.8 NC_005262.1 + 29170 0.66 0.887286
Target:  5'- aCCAUGcgucAGGCgG-CCGucGCCGAGCUg- -3'
miRNA:   3'- -GGUAC----UUCGgCaGGCu-CGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 30095 0.67 0.847323
Target:  5'- uUCAUGuuggcGGCCGggaCCuuGCCGAAUUUGg -3'
miRNA:   3'- -GGUACu----UCGGCa--GGcuCGGCUUGAAC- -5'
24109 5' -52.8 NC_005262.1 + 31106 0.67 0.855798
Target:  5'- cCCAccugGAGGCCGgcggCCGgcAGCgCGAACUc- -3'
miRNA:   3'- -GGUa---CUUCGGCa---GGC--UCG-GCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 31920 0.66 0.86404
Target:  5'- cCCGUGAAGUcgggCGUUCGAugaaGUCGAGgUUGa -3'
miRNA:   3'- -GGUACUUCG----GCAGGCU----CGGCUUgAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.