Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24109 | 5' | -52.8 | NC_005262.1 | + | 63618 | 1.12 | 0.001557 |
Target: 5'- aCCAUGAAGCCGUCCGAGCCGAACUUGa -3' miRNA: 3'- -GGUACUUCGGCAGGCUCGGCUUGAAC- -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 43667 | 0.66 | 0.893809 |
Target: 5'- aCGUGGcgaccugaacgcaAGCCaagCCGGGCCGAAUUc- -3' miRNA: 3'- gGUACU-------------UCGGca-GGCUCGGCUUGAac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 29170 | 0.66 | 0.887286 |
Target: 5'- aCCAUGcgucAGGCgG-CCGucGCCGAGCUg- -3' miRNA: 3'- -GGUAC----UUCGgCaGGCu-CGGCUUGAac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 3027 | 0.67 | 0.855798 |
Target: 5'- uCCGgcgGAAGCCGU-UGAGCCGGc---- -3' miRNA: 3'- -GGUa--CUUCGGCAgGCUCGGCUugaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 61376 | 0.67 | 0.83862 |
Target: 5'- aCGUGAAGCCGcUgCGcAGCCGcuACUa- -3' miRNA: 3'- gGUACUUCGGC-AgGC-UCGGCu-UGAac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 6717 | 0.67 | 0.829701 |
Target: 5'- uCCAUGAuGCCGggcCCGugcuuGUCGAACa-- -3' miRNA: 3'- -GGUACUuCGGCa--GGCu----CGGCUUGaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 34809 | 0.67 | 0.811248 |
Target: 5'- gCCuc-AAGCCGUCCGAggauGCCGAucaGCUc- -3' miRNA: 3'- -GGuacUUCGGCAGGCU----CGGCU---UGAac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 11402 | 0.67 | 0.811248 |
Target: 5'- uCCAcgccGAAGCCGcgCCGcGCCGGGCc-- -3' miRNA: 3'- -GGUa---CUUCGGCa-GGCuCGGCUUGaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 56782 | 0.67 | 0.807464 |
Target: 5'- aCAUGAAGCUGgccggccugaaggCCGAcGUCGAGCg-- -3' miRNA: 3'- gGUACUUCGGCa------------GGCU-CGGCUUGaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 23670 | 0.72 | 0.567206 |
Target: 5'- uCCGUGGAuGCCGcCCGAGCgGcGCgugUGg -3' miRNA: 3'- -GGUACUU-CGGCaGGCUCGgCuUGa--AC- -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 9129 | 0.71 | 0.643972 |
Target: 5'- gCUAUGAGGaCCGgcgCCGGGCCGGu---- -3' miRNA: 3'- -GGUACUUC-GGCa--GGCUCGGCUugaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 21877 | 0.71 | 0.643972 |
Target: 5'- --cUGAAGCCGaCCGcgcAGCCGGACg-- -3' miRNA: 3'- gguACUUCGGCaGGC---UCGGCUUGaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 33312 | 0.71 | 0.643972 |
Target: 5'- ---cGAAGCCGU-CGAGUCGGACg-- -3' miRNA: 3'- gguaCUUCGGCAgGCUCGGCUUGaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 8227 | 0.68 | 0.76201 |
Target: 5'- gCCAUG-AGCUGUCgGcgaagcucgaAGCCGAGCg-- -3' miRNA: 3'- -GGUACuUCGGCAGgC----------UCGGCUUGaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 12280 | 0.68 | 0.782183 |
Target: 5'- ---cGcGGCCGg-CGAGCCGAGCUUu -3' miRNA: 3'- gguaCuUCGGCagGCUCGGCUUGAAc -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 47003 | 0.78 | 0.261135 |
Target: 5'- uCCAUGAGcucGCCGUCCGGGCUGAu---- -3' miRNA: 3'- -GGUACUU---CGGCAGGCUCGGCUugaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 57337 | 0.66 | 0.894521 |
Target: 5'- gCGUcGAuGCCGgcgucucgCCgGAGCCGAACUa- -3' miRNA: 3'- gGUA-CUuCGGCa-------GG-CUCGGCUUGAac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 25568 | 0.66 | 0.887286 |
Target: 5'- aCCAgacgGcAGCCGUCUGcGCCGGGgUa- -3' miRNA: 3'- -GGUa---CuUCGGCAGGCuCGGCUUgAac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 21782 | 0.66 | 0.887286 |
Target: 5'- -gGUGAGGCCGcccgaUUCGAGgCGGGCg-- -3' miRNA: 3'- ggUACUUCGGC-----AGGCUCgGCUUGaac -5' |
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24109 | 5' | -52.8 | NC_005262.1 | + | 60299 | 0.66 | 0.87979 |
Target: 5'- aCCGU-AAGCCGaUCCGcGUCGGGCg-- -3' miRNA: 3'- -GGUAcUUCGGC-AGGCuCGGCUUGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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