miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24109 5' -52.8 NC_005262.1 + 4825 0.71 0.63296
Target:  5'- gCGUGAGGCCG-CCGgcGGCCG-GCUg- -3'
miRNA:   3'- gGUACUUCGGCaGGC--UCGGCuUGAac -5'
24109 5' -52.8 NC_005262.1 + 14882 0.73 0.513765
Target:  5'- uUCAgGAGGUCGUCCGAGCC---CUUGa -3'
miRNA:   3'- -GGUaCUUCGGCAGGCUCGGcuuGAAC- -5'
24109 5' -52.8 NC_005262.1 + 42077 0.75 0.404734
Target:  5'- gCCuUGAGGCCGUCCuuGCCGAuCUg- -3'
miRNA:   3'- -GGuACUUCGGCAGGcuCGGCUuGAac -5'
24109 5' -52.8 NC_005262.1 + 3955 0.67 0.847323
Target:  5'- aCGcGAucGCCGUuuGAGUCGAGCa-- -3'
miRNA:   3'- gGUaCUu-CGGCAggCUCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 31106 0.67 0.855798
Target:  5'- cCCAccugGAGGCCGgcggCCGgcAGCgCGAACUc- -3'
miRNA:   3'- -GGUa---CUUCGGCa---GGC--UCG-GCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 59051 0.66 0.894521
Target:  5'- uCCGUGgcGCCGgCagGAGCuCGAGCa-- -3'
miRNA:   3'- -GGUACuuCGGCaGg-CUCG-GCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 57337 0.66 0.894521
Target:  5'- gCGUcGAuGCCGgcgucucgCCgGAGCCGAACUa- -3'
miRNA:   3'- gGUA-CUuCGGCa-------GG-CUCGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 25568 0.66 0.887286
Target:  5'- aCCAgacgGcAGCCGUCUGcGCCGGGgUa- -3'
miRNA:   3'- -GGUa---CuUCGGCAGGCuCGGCUUgAac -5'
24109 5' -52.8 NC_005262.1 + 21782 0.66 0.887286
Target:  5'- -gGUGAGGCCGcccgaUUCGAGgCGGGCg-- -3'
miRNA:   3'- ggUACUUCGGC-----AGGCUCgGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 60299 0.66 0.87979
Target:  5'- aCCGU-AAGCCGaUCCGcGUCGGGCg-- -3'
miRNA:   3'- -GGUAcUUCGGC-AGGCuCGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 60815 0.66 0.87979
Target:  5'- gCAcgGAGGCCGauugcCCGAuGCCGGGCa-- -3'
miRNA:   3'- gGUa-CUUCGGCa----GGCU-CGGCUUGaac -5'
24109 5' -52.8 NC_005262.1 + 31920 0.66 0.86404
Target:  5'- cCCGUGAAGUcgggCGUUCGAugaaGUCGAGgUUGa -3'
miRNA:   3'- -GGUACUUCG----GCAGGCU----CGGCUUgAAC- -5'
24109 5' -52.8 NC_005262.1 + 33578 0.66 0.86404
Target:  5'- gCCGUGAuGUCG-CCGuuGUCGAACUg- -3'
miRNA:   3'- -GGUACUuCGGCaGGCu-CGGCUUGAac -5'
24109 5' -52.8 NC_005262.1 + 47003 0.78 0.261135
Target:  5'- uCCAUGAGcucGCCGUCCGGGCUGAu---- -3'
miRNA:   3'- -GGUACUU---CGGCAGGCUCGGCUugaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.