miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 24793 0.68 0.289129
Target:  5'- -gGCGGCUcGCCgGGCGUCGGCGGcGCGu -3'
miRNA:   3'- ugUGCUGA-UGG-CCGUGGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 24978 0.68 0.281457
Target:  5'- aACACGAUgcugGCCGGC-CUGGCcgcaaccGGGUAu -3'
miRNA:   3'- -UGUGCUGa---UGGCCGuGGCCG-------CCCGUc -5'
24110 3' -61.1 NC_005263.2 + 27378 0.71 0.178391
Target:  5'- gGCGCGGCggcgGCCGGCgcgcugACCGGCugcgucacgaccGGcGCAGg -3'
miRNA:   3'- -UGUGCUGa---UGGCCG------UGGCCG------------CC-CGUC- -5'
24110 3' -61.1 NC_005263.2 + 27678 0.77 0.070752
Target:  5'- aGCACGGCcgccuucuugugcgcGCCGGCGCCGGCGGccGCAu -3'
miRNA:   3'- -UGUGCUGa--------------UGGCCGUGGCCGCC--CGUc -5'
24110 3' -61.1 NC_005263.2 + 28141 0.66 0.374858
Target:  5'- uGCACG-CUGCCaGCGCCGagcacGCGaGCAGc -3'
miRNA:   3'- -UGUGCuGAUGGcCGUGGC-----CGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 28787 0.7 0.22525
Target:  5'- gACAuCGACcACCGcacaGCCGGCGGGCc- -3'
miRNA:   3'- -UGU-GCUGaUGGCcg--UGGCCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 28934 0.69 0.255558
Target:  5'- cGCGCGGCcacgaGCC-GCGCCGGCGGauGCAc -3'
miRNA:   3'- -UGUGCUGa----UGGcCGUGGCCGCC--CGUc -5'
24110 3' -61.1 NC_005263.2 + 29204 0.67 0.341791
Target:  5'- cGCuCGACgcagGCCGGCGCguauuugccguCGGCGcGCAGc -3'
miRNA:   3'- -UGuGCUGa---UGGCCGUG-----------GCCGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 30355 0.66 0.358058
Target:  5'- aGCGCGGCcgcgcugccGCCGGCGCCGaGUGcgagccccaugcGGCGGc -3'
miRNA:   3'- -UGUGCUGa--------UGGCCGUGGC-CGC------------CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 31255 0.66 0.392185
Target:  5'- cGCGCGGCg--CGGCGCC---GGGCAGg -3'
miRNA:   3'- -UGUGCUGaugGCCGUGGccgCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 32003 0.67 0.349857
Target:  5'- --uCGGCUGCCGuaGCUGcGCGGGUg- -3'
miRNA:   3'- uguGCUGAUGGCcgUGGC-CGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 32459 0.67 0.326066
Target:  5'- gACGCGACgaucgcguagAUCGGCGUCGGCGcauucagcgacGGCAGu -3'
miRNA:   3'- -UGUGCUGa---------UGGCCGUGGCCGC-----------CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 32857 0.66 0.358058
Target:  5'- gACACGucaaACgaguUCGauGUGCCGGCGGGCGGc -3'
miRNA:   3'- -UGUGC----UGau--GGC--CGUGGCCGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 35525 0.77 0.070555
Target:  5'- cGCGcCGACUGcgcCCGGCGgCGcGCGGGCGGg -3'
miRNA:   3'- -UGU-GCUGAU---GGCCGUgGC-CGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 35635 0.67 0.333075
Target:  5'- uGCGCG-CcGCCGGUAucguguuCCGcGCGGGCGa -3'
miRNA:   3'- -UGUGCuGaUGGCCGU-------GGC-CGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 37706 0.68 0.296245
Target:  5'- cGCGCGccggacccgcucGCcgGCCGGC-CCGGCGcguGGCGGc -3'
miRNA:   3'- -UGUGC------------UGa-UGGCCGuGGCCGC---CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 37933 0.68 0.2753
Target:  5'- gGCGCG-CcGCCGGCAgCCGGUGcGCAa -3'
miRNA:   3'- -UGUGCuGaUGGCCGU-GGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 38300 0.67 0.326066
Target:  5'- cGCACGAaggcuaUGCC-GCACgCGGCGaGGCGc -3'
miRNA:   3'- -UGUGCUg-----AUGGcCGUG-GCCGC-CCGUc -5'
24110 3' -61.1 NC_005263.2 + 42003 0.67 0.318407
Target:  5'- cACAUGACgUGCCGGCAgugCGGCcGGCc- -3'
miRNA:   3'- -UGUGCUG-AUGGCCGUg--GCCGcCCGuc -5'
24110 3' -61.1 NC_005263.2 + 43052 0.7 0.203249
Target:  5'- gGCGCGACaaugGCCcGCGuuGGCGGGUu- -3'
miRNA:   3'- -UGUGCUGa---UGGcCGUggCCGCCCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.