miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 15457 0.73 0.125663
Target:  5'- aGCGCGAaaugagcgacgauUUGCCGuGCugCGGCGGcGCGGu -3'
miRNA:   3'- -UGUGCU-------------GAUGGC-CGugGCCGCC-CGUC- -5'
24110 3' -61.1 NC_005263.2 + 16421 0.72 0.164804
Target:  5'- uACuCGGCgu-CGGCGCUGGCGcGGCGGg -3'
miRNA:   3'- -UGuGCUGaugGCCGUGGCCGC-CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 17317 0.68 0.289129
Target:  5'- cGCGCGAauucggcCCGGCGCCGGUGgcuucgacguucGGCAu -3'
miRNA:   3'- -UGUGCUgau----GGCCGUGGCCGC------------CCGUc -5'
24110 3' -61.1 NC_005263.2 + 17393 0.78 0.056343
Target:  5'- uGC-CGGCgcgGCCGcGCGCCuGGCGGGCGGu -3'
miRNA:   3'- -UGuGCUGa--UGGC-CGUGG-CCGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 17733 0.71 0.192963
Target:  5'- cGCAUggGGCUcgcACuCGGCGCCGGC-GGCAGc -3'
miRNA:   3'- -UGUG--CUGA---UG-GCCGUGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 18155 0.71 0.187993
Target:  5'- uCACaGCUAUCGGCGgCGGCGuuGGCGGc -3'
miRNA:   3'- uGUGcUGAUGGCCGUgGCCGC--CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 18560 0.66 0.392185
Target:  5'- cGCGCaGC--CCGGCACCGGUGGcGUc- -3'
miRNA:   3'- -UGUGcUGauGGCCGUGGCCGCC-CGuc -5'
24110 3' -61.1 NC_005263.2 + 19685 0.66 0.392185
Target:  5'- cCGCGACguucacgcgcgUGCCGGCGCCuccGgGGGUAu -3'
miRNA:   3'- uGUGCUG-----------AUGGCCGUGGc--CgCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 19755 0.68 0.274623
Target:  5'- gGCGCG-CUGgCGGCgcucgugGCCGuGUGGGCAa -3'
miRNA:   3'- -UGUGCuGAUgGCCG-------UGGC-CGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 20410 0.79 0.048914
Target:  5'- uAUGCGGCcGCCGGCGCCGGCGcGCAc -3'
miRNA:   3'- -UGUGCUGaUGGCCGUGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 20570 0.69 0.231058
Target:  5'- uGCcCGGcCUGCCGGCcguGCCGaCGGGCAc -3'
miRNA:   3'- -UGuGCU-GAUGGCCG---UGGCcGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 20795 0.66 0.401042
Target:  5'- gGCGcCGACgcaAUgGGUcaaguuccugGCCGGCGcGGCAGg -3'
miRNA:   3'- -UGU-GCUGa--UGgCCG----------UGGCCGC-CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 20972 0.68 0.303496
Target:  5'- gGCACGAaaGCCGGUACgGGUucGGuGCAa -3'
miRNA:   3'- -UGUGCUgaUGGCCGUGgCCG--CC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 21108 0.66 0.383457
Target:  5'- -gGCGACgagcCCGGCGCa-GCGGGUg- -3'
miRNA:   3'- ugUGCUGau--GGCCGUGgcCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 21626 0.66 0.401042
Target:  5'- gAUugGA--GCgCGGCGCCGGaauGGGCGa -3'
miRNA:   3'- -UGugCUgaUG-GCCGUGGCCg--CCCGUc -5'
24110 3' -61.1 NC_005263.2 + 22189 0.67 0.341791
Target:  5'- -gGCGA--ACCGGUGCUGGCGuGGCc- -3'
miRNA:   3'- ugUGCUgaUGGCCGUGGCCGC-CCGuc -5'
24110 3' -61.1 NC_005263.2 + 22473 0.7 0.208031
Target:  5'- uCACGAUUgcuucuccuugucGCCGGCGgCGGCcGGCGGc -3'
miRNA:   3'- uGUGCUGA-------------UGGCCGUgGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 24312 0.66 0.392185
Target:  5'- -gACGGCcGCCGGCACgGGCaucGCAa -3'
miRNA:   3'- ugUGCUGaUGGCCGUGgCCGcc-CGUc -5'
24110 3' -61.1 NC_005263.2 + 24538 0.66 0.401042
Target:  5'- gGCaACGGCgg-CGGCGCgGGCGgcGGCGGc -3'
miRNA:   3'- -UG-UGCUGaugGCCGUGgCCGC--CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 24676 0.67 0.349857
Target:  5'- uACACGAUcgggggcGCCGGUAaCGGCGGcGCGc -3'
miRNA:   3'- -UGUGCUGa------UGGCCGUgGCCGCC-CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.