Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24110 | 3' | -61.1 | NC_005263.2 | + | 1338 | 0.7 | 0.223532 |
Target: 5'- aACACGAUcacgGCCGGUugcagaaucuuuuuGCCGGC-GGCGGc -3' miRNA: 3'- -UGUGCUGa---UGGCCG--------------UGGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28787 | 0.7 | 0.22525 |
Target: 5'- gACAuCGACcACCGcacaGCCGGCGGGCc- -3' miRNA: 3'- -UGU-GCUGaUGGCcg--UGGCCGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 2378 | 0.69 | 0.22872 |
Target: 5'- gACGCGGCguaacccaugaCGGCGCCGGCGGucGCu- -3' miRNA: 3'- -UGUGCUGaug--------GCCGUGGCCGCC--CGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 20570 | 0.69 | 0.231058 |
Target: 5'- uGCcCGGcCUGCCGGCcguGCCGaCGGGCAc -3' miRNA: 3'- -UGuGCU-GAUGGCCG---UGGCcGCCCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 5226 | 0.69 | 0.236392 |
Target: 5'- cGCGCGGCacGCCauugacgcgaucaGGCGCCGucaucaGCGGGCGGu -3' miRNA: 3'- -UGUGCUGa-UGG-------------CCGUGGC------CGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 5028 | 0.69 | 0.236991 |
Target: 5'- cGCuCGACaGCCGGC-CCGGCGGcCGa -3' miRNA: 3'- -UGuGCUGaUGGCCGuGGCCGCCcGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28934 | 0.69 | 0.255558 |
Target: 5'- cGCGCGGCcacgaGCC-GCGCCGGCGGauGCAc -3' miRNA: 3'- -UGUGCUGa----UGGcCGUGGCCGCC--CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 2668 | 0.69 | 0.258121 |
Target: 5'- -gGCGAC-ACCGGCagccugcagugucgcGCCGGC-GGCGGc -3' miRNA: 3'- ugUGCUGaUGGCCG---------------UGGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 19755 | 0.68 | 0.274623 |
Target: 5'- gGCGCG-CUGgCGGCgcucgugGCCGuGUGGGCAa -3' miRNA: 3'- -UGUGCuGAUgGCCG-------UGGC-CGCCCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 15381 | 0.68 | 0.2753 |
Target: 5'- aGCGCGuACguugcAUUGGCGauccgcaCGGCGGGCAGc -3' miRNA: 3'- -UGUGC-UGa----UGGCCGUg------GCCGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 14161 | 0.68 | 0.2753 |
Target: 5'- -gGCGACUucggGCCGGCgGCCGGUGuGCGc -3' miRNA: 3'- ugUGCUGA----UGGCCG-UGGCCGCcCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 37933 | 0.68 | 0.2753 |
Target: 5'- gGCGCG-CcGCCGGCAgCCGGUGcGCAa -3' miRNA: 3'- -UGUGCuGaUGGCCGU-GGCCGCcCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 24978 | 0.68 | 0.281457 |
Target: 5'- aACACGAUgcugGCCGGC-CUGGCcgcaaccGGGUAu -3' miRNA: 3'- -UGUGCUGa---UGGCCGuGGCCG-------CCCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 3193 | 0.68 | 0.282147 |
Target: 5'- aGCACGAg-GCCGGUgaGCCGGCccGGCGc -3' miRNA: 3'- -UGUGCUgaUGGCCG--UGGCCGc-CCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 8876 | 0.68 | 0.28702 |
Target: 5'- uACGCGgcccguGCUGCCGGUgcagcgcgcgcaauACUGGC-GGCAGg -3' miRNA: 3'- -UGUGC------UGAUGGCCG--------------UGGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 24793 | 0.68 | 0.289129 |
Target: 5'- -gGCGGCUcGCCgGGCGUCGGCGGcGCGu -3' miRNA: 3'- ugUGCUGA-UGG-CCGUGGCCGCC-CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 17317 | 0.68 | 0.289129 |
Target: 5'- cGCGCGAauucggcCCGGCGCCGGUGgcuucgacguucGGCAu -3' miRNA: 3'- -UGUGCUgau----GGCCGUGGCCGC------------CCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 45718 | 0.68 | 0.296245 |
Target: 5'- -aGCGACcGCCGGCGCCGucaUGGGUu- -3' miRNA: 3'- ugUGCUGaUGGCCGUGGCc--GCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 37706 | 0.68 | 0.296245 |
Target: 5'- cGCGCGccggacccgcucGCcgGCCGGC-CCGGCGcguGGCGGc -3' miRNA: 3'- -UGUGC------------UGa-UGGCCGuGGCCGC---CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 20972 | 0.68 | 0.303496 |
Target: 5'- gGCACGAaaGCCGGUACgGGUucGGuGCAa -3' miRNA: 3'- -UGUGCUgaUGGCCGUGgCCG--CC-CGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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