miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 38300 0.67 0.326066
Target:  5'- cGCACGAaggcuaUGCC-GCACgCGGCGaGGCGc -3'
miRNA:   3'- -UGUGCUg-----AUGGcCGUG-GCCGC-CCGUc -5'
24110 3' -61.1 NC_005263.2 + 32459 0.67 0.326066
Target:  5'- gACGCGACgaucgcguagAUCGGCGUCGGCGcauucagcgacGGCAGu -3'
miRNA:   3'- -UGUGCUGa---------UGGCCGUGGCCGC-----------CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 47220 0.67 0.326066
Target:  5'- -gGCGACcGCCGcgcugaacgaaGCGCCGGCcGGCAc -3'
miRNA:   3'- ugUGCUGaUGGC-----------CGUGGCCGcCCGUc -5'
24110 3' -61.1 NC_005263.2 + 42003 0.67 0.318407
Target:  5'- cACAUGACgUGCCGGCAgugCGGCcGGCc- -3'
miRNA:   3'- -UGUGCUG-AUGGCCGUg--GCCGcCCGuc -5'
24110 3' -61.1 NC_005263.2 + 4652 0.67 0.318407
Target:  5'- uCAUGGCgACgGGCagGCCGGCGcGCGGg -3'
miRNA:   3'- uGUGCUGaUGgCCG--UGGCCGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 20972 0.68 0.303496
Target:  5'- gGCACGAaaGCCGGUACgGGUucGGuGCAa -3'
miRNA:   3'- -UGUGCUgaUGGCCGUGgCCG--CC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 45718 0.68 0.296245
Target:  5'- -aGCGACcGCCGGCGCCGucaUGGGUu- -3'
miRNA:   3'- ugUGCUGaUGGCCGUGGCc--GCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 37706 0.68 0.296245
Target:  5'- cGCGCGccggacccgcucGCcgGCCGGC-CCGGCGcguGGCGGc -3'
miRNA:   3'- -UGUGC------------UGa-UGGCCGuGGCCGC---CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 17317 0.68 0.289129
Target:  5'- cGCGCGAauucggcCCGGCGCCGGUGgcuucgacguucGGCAu -3'
miRNA:   3'- -UGUGCUgau----GGCCGUGGCCGC------------CCGUc -5'
24110 3' -61.1 NC_005263.2 + 24793 0.68 0.289129
Target:  5'- -gGCGGCUcGCCgGGCGUCGGCGGcGCGu -3'
miRNA:   3'- ugUGCUGA-UGG-CCGUGGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 8876 0.68 0.28702
Target:  5'- uACGCGgcccguGCUGCCGGUgcagcgcgcgcaauACUGGC-GGCAGg -3'
miRNA:   3'- -UGUGC------UGAUGGCCG--------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 3193 0.68 0.282147
Target:  5'- aGCACGAg-GCCGGUgaGCCGGCccGGCGc -3'
miRNA:   3'- -UGUGCUgaUGGCCG--UGGCCGc-CCGUc -5'
24110 3' -61.1 NC_005263.2 + 24978 0.68 0.281457
Target:  5'- aACACGAUgcugGCCGGC-CUGGCcgcaaccGGGUAu -3'
miRNA:   3'- -UGUGCUGa---UGGCCGuGGCCG-------CCCGUc -5'
24110 3' -61.1 NC_005263.2 + 14161 0.68 0.2753
Target:  5'- -gGCGACUucggGCCGGCgGCCGGUGuGCGc -3'
miRNA:   3'- ugUGCUGA----UGGCCG-UGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 15381 0.68 0.2753
Target:  5'- aGCGCGuACguugcAUUGGCGauccgcaCGGCGGGCAGc -3'
miRNA:   3'- -UGUGC-UGa----UGGCCGUg------GCCGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 37933 0.68 0.2753
Target:  5'- gGCGCG-CcGCCGGCAgCCGGUGcGCAa -3'
miRNA:   3'- -UGUGCuGaUGGCCGU-GGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 19755 0.68 0.274623
Target:  5'- gGCGCG-CUGgCGGCgcucgugGCCGuGUGGGCAa -3'
miRNA:   3'- -UGUGCuGAUgGCCG-------UGGC-CGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 2668 0.69 0.258121
Target:  5'- -gGCGAC-ACCGGCagccugcagugucgcGCCGGC-GGCGGc -3'
miRNA:   3'- ugUGCUGaUGGCCG---------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 28934 0.69 0.255558
Target:  5'- cGCGCGGCcacgaGCC-GCGCCGGCGGauGCAc -3'
miRNA:   3'- -UGUGCUGa----UGGcCGUGGCCGCC--CGUc -5'
24110 3' -61.1 NC_005263.2 + 5028 0.69 0.236991
Target:  5'- cGCuCGACaGCCGGC-CCGGCGGcCGa -3'
miRNA:   3'- -UGuGCUGaUGGCCGuGGCCGCCcGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.