miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 5226 0.69 0.236392
Target:  5'- cGCGCGGCacGCCauugacgcgaucaGGCGCCGucaucaGCGGGCGGu -3'
miRNA:   3'- -UGUGCUGa-UGG-------------CCGUGGC------CGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 20570 0.69 0.231058
Target:  5'- uGCcCGGcCUGCCGGCcguGCCGaCGGGCAc -3'
miRNA:   3'- -UGuGCU-GAUGGCCG---UGGCcGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 2378 0.69 0.22872
Target:  5'- gACGCGGCguaacccaugaCGGCGCCGGCGGucGCu- -3'
miRNA:   3'- -UGUGCUGaug--------GCCGUGGCCGCC--CGuc -5'
24110 3' -61.1 NC_005263.2 + 28787 0.7 0.22525
Target:  5'- gACAuCGACcACCGcacaGCCGGCGGGCc- -3'
miRNA:   3'- -UGU-GCUGaUGGCcg--UGGCCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 1338 0.7 0.223532
Target:  5'- aACACGAUcacgGCCGGUugcagaaucuuuuuGCCGGC-GGCGGc -3'
miRNA:   3'- -UGUGCUGa---UGGCCG--------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 9477 0.7 0.219567
Target:  5'- gACGCGGCUucauucgcGCCGGCGCUauccaucgcguGcGCGGGCuGa -3'
miRNA:   3'- -UGUGCUGA--------UGGCCGUGG-----------C-CGCCCGuC- -5'
24110 3' -61.1 NC_005263.2 + 3338 0.7 0.219567
Target:  5'- uGCGCG-CcGCCGGCGCCGcGCGcGGUc- -3'
miRNA:   3'- -UGUGCuGaUGGCCGUGGC-CGC-CCGuc -5'
24110 3' -61.1 NC_005263.2 + 897 0.7 0.214007
Target:  5'- aGCGCGGCggUCGcCGCCGGCGGGUu- -3'
miRNA:   3'- -UGUGCUGauGGCcGUGGCCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 22473 0.7 0.208031
Target:  5'- uCACGAUUgcuucuccuugucGCCGGCGgCGGCcGGCGGc -3'
miRNA:   3'- uGUGCUGA-------------UGGCCGUgGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 43052 0.7 0.203249
Target:  5'- gGCGCGACaaugGCCcGCGuuGGCGGGUu- -3'
miRNA:   3'- -UGUGCUGa---UGGcCGUggCCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 17733 0.71 0.192963
Target:  5'- cGCAUggGGCUcgcACuCGGCGCCGGC-GGCAGc -3'
miRNA:   3'- -UGUG--CUGA---UG-GCCGUGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 18155 0.71 0.187993
Target:  5'- uCACaGCUAUCGGCGgCGGCGuuGGCGGc -3'
miRNA:   3'- uGUGcUGAUGGCCGUgGCCGC--CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 27378 0.71 0.178391
Target:  5'- gGCGCGGCggcgGCCGGCgcgcugACCGGCugcgucacgaccGGcGCAGg -3'
miRNA:   3'- -UGUGCUGa---UGGCCG------UGGCCG------------CC-CGUC- -5'
24110 3' -61.1 NC_005263.2 + 46159 0.71 0.178391
Target:  5'- gACGCGGUUGCCGGCgucGCCGGUGccGGCGc -3'
miRNA:   3'- -UGUGCUGAUGGCCG---UGGCCGC--CCGUc -5'
24110 3' -61.1 NC_005263.2 + 16421 0.72 0.164804
Target:  5'- uACuCGGCgu-CGGCGCUGGCGcGGCGGg -3'
miRNA:   3'- -UGuGCUGaugGCCGUGGCCGC-CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 10868 0.72 0.160485
Target:  5'- uCGCGGCggaACuCGGCACCGGCGcGCGu -3'
miRNA:   3'- uGUGCUGa--UG-GCCGUGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 44762 0.73 0.126004
Target:  5'- cGCuCGACcgcGCgCGGCGCCGGCGGcgcGCAGa -3'
miRNA:   3'- -UGuGCUGa--UG-GCCGUGGCCGCC---CGUC- -5'
24110 3' -61.1 NC_005263.2 + 15457 0.73 0.125663
Target:  5'- aGCGCGAaaugagcgacgauUUGCCGuGCugCGGCGGcGCGGu -3'
miRNA:   3'- -UGUGCU-------------GAUGGC-CGugGCCGCC-CGUC- -5'
24110 3' -61.1 NC_005263.2 + 10154 0.74 0.116123
Target:  5'- gGCGCGGCaucgGCCGGUugcgcaccggcuGCCGGCGGcGCGc -3'
miRNA:   3'- -UGUGCUGa---UGGCCG------------UGGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 27678 0.77 0.070752
Target:  5'- aGCACGGCcgccuucuugugcgcGCCGGCGCCGGCGGccGCAu -3'
miRNA:   3'- -UGUGCUGa--------------UGGCCGUGGCCGCC--CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.