miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 20570 0.69 0.231058
Target:  5'- uGCcCGGcCUGCCGGCcguGCCGaCGGGCAc -3'
miRNA:   3'- -UGuGCU-GAUGGCCG---UGGCcGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 21108 0.66 0.383457
Target:  5'- -gGCGACgagcCCGGCGCa-GCGGGUg- -3'
miRNA:   3'- ugUGCUGau--GGCCGUGgcCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 42003 0.67 0.318407
Target:  5'- cACAUGACgUGCCGGCAgugCGGCcGGCc- -3'
miRNA:   3'- -UGUGCUG-AUGGCCGUg--GCCGcCCGuc -5'
24110 3' -61.1 NC_005263.2 + 2378 0.69 0.22872
Target:  5'- gACGCGGCguaacccaugaCGGCGCCGGCGGucGCu- -3'
miRNA:   3'- -UGUGCUGaug--------GCCGUGGCCGCC--CGuc -5'
24110 3' -61.1 NC_005263.2 + 22189 0.67 0.341791
Target:  5'- -gGCGA--ACCGGUGCUGGCGuGGCc- -3'
miRNA:   3'- ugUGCUgaUGGCCGUGGCCGC-CCGuc -5'
24110 3' -61.1 NC_005263.2 + 19685 0.66 0.392185
Target:  5'- cCGCGACguucacgcgcgUGCCGGCGCCuccGgGGGUAu -3'
miRNA:   3'- uGUGCUG-----------AUGGCCGUGGc--CgCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 30355 0.66 0.358058
Target:  5'- aGCGCGGCcgcgcugccGCCGGCGCCGaGUGcgagccccaugcGGCGGc -3'
miRNA:   3'- -UGUGCUGa--------UGGCCGUGGC-CGC------------CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 1338 0.7 0.223532
Target:  5'- aACACGAUcacgGCCGGUugcagaaucuuuuuGCCGGC-GGCGGc -3'
miRNA:   3'- -UGUGCUGa---UGGCCG--------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 9477 0.7 0.219567
Target:  5'- gACGCGGCUucauucgcGCCGGCGCUauccaucgcguGcGCGGGCuGa -3'
miRNA:   3'- -UGUGCUGA--------UGGCCGUGG-----------C-CGCCCGuC- -5'
24110 3' -61.1 NC_005263.2 + 5028 0.69 0.236991
Target:  5'- cGCuCGACaGCCGGC-CCGGCGGcCGa -3'
miRNA:   3'- -UGuGCUGaUGGCCGuGGCCGCCcGUc -5'
24110 3' -61.1 NC_005263.2 + 3193 0.68 0.282147
Target:  5'- aGCACGAg-GCCGGUgaGCCGGCccGGCGc -3'
miRNA:   3'- -UGUGCUgaUGGCCG--UGGCCGc-CCGUc -5'
24110 3' -61.1 NC_005263.2 + 11756 0.66 0.366392
Target:  5'- gACGCGAC-ACCuGGCgACCacuCGGGCGGu -3'
miRNA:   3'- -UGUGCUGaUGG-CCG-UGGcc-GCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 10868 0.72 0.160485
Target:  5'- uCGCGGCggaACuCGGCACCGGCGcGCGu -3'
miRNA:   3'- uGUGCUGa--UG-GCCGUGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 16421 0.72 0.164804
Target:  5'- uACuCGGCgu-CGGCGCUGGCGcGGCGGg -3'
miRNA:   3'- -UGuGCUGaugGCCGUGGCCGC-CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 46159 0.71 0.178391
Target:  5'- gACGCGGUUGCCGGCgucGCCGGUGccGGCGc -3'
miRNA:   3'- -UGUGCUGAUGGCCG---UGGCCGC--CCGUc -5'
24110 3' -61.1 NC_005263.2 + 27378 0.71 0.178391
Target:  5'- gGCGCGGCggcgGCCGGCgcgcugACCGGCugcgucacgaccGGcGCAGg -3'
miRNA:   3'- -UGUGCUGa---UGGCCG------UGGCCG------------CC-CGUC- -5'
24110 3' -61.1 NC_005263.2 + 18155 0.71 0.187993
Target:  5'- uCACaGCUAUCGGCGgCGGCGuuGGCGGc -3'
miRNA:   3'- uGUGcUGAUGGCCGUgGCCGC--CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 20972 0.68 0.303496
Target:  5'- gGCACGAaaGCCGGUACgGGUucGGuGCAa -3'
miRNA:   3'- -UGUGCUgaUGGCCGUGgCCG--CC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 45718 0.68 0.296245
Target:  5'- -aGCGACcGCCGGCGCCGucaUGGGUu- -3'
miRNA:   3'- ugUGCUGaUGGCCGUGGCc--GCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 17317 0.68 0.289129
Target:  5'- cGCGCGAauucggcCCGGCGCCGGUGgcuucgacguucGGCAu -3'
miRNA:   3'- -UGUGCUgau----GGCCGUGGCCGC------------CCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.