miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 20410 0.79 0.048914
Target:  5'- uAUGCGGCcGCCGGCGCCGGCGcGCAc -3'
miRNA:   3'- -UGUGCUGaUGGCCGUGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 37706 0.68 0.296245
Target:  5'- cGCGCGccggacccgcucGCcgGCCGGC-CCGGCGcguGGCGGc -3'
miRNA:   3'- -UGUGC------------UGa-UGGCCGuGGCCGC---CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 42003 0.67 0.318407
Target:  5'- cACAUGACgUGCCGGCAgugCGGCcGGCc- -3'
miRNA:   3'- -UGUGCUG-AUGGCCGUg--GCCGcCCGuc -5'
24110 3' -61.1 NC_005263.2 + 21626 0.66 0.401042
Target:  5'- gAUugGA--GCgCGGCGCCGGaauGGGCGa -3'
miRNA:   3'- -UGugCUgaUG-GCCGUGGCCg--CCCGUc -5'
24110 3' -61.1 NC_005263.2 + 44762 0.73 0.126004
Target:  5'- cGCuCGACcgcGCgCGGCGCCGGCGGcgcGCAGa -3'
miRNA:   3'- -UGuGCUGa--UG-GCCGUGGCCGCC---CGUC- -5'
24110 3' -61.1 NC_005263.2 + 43052 0.7 0.203249
Target:  5'- gGCGCGACaaugGCCcGCGuuGGCGGGUu- -3'
miRNA:   3'- -UGUGCUGa---UGGcCGUggCCGCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 9477 0.7 0.219567
Target:  5'- gACGCGGCUucauucgcGCCGGCGCUauccaucgcguGcGCGGGCuGa -3'
miRNA:   3'- -UGUGCUGA--------UGGCCGUGG-----------C-CGCCCGuC- -5'
24110 3' -61.1 NC_005263.2 + 1338 0.7 0.223532
Target:  5'- aACACGAUcacgGCCGGUugcagaaucuuuuuGCCGGC-GGCGGc -3'
miRNA:   3'- -UGUGCUGa---UGGCCG--------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 5028 0.69 0.236991
Target:  5'- cGCuCGACaGCCGGC-CCGGCGGcCGa -3'
miRNA:   3'- -UGuGCUGaUGGCCGuGGCCGCCcGUc -5'
24110 3' -61.1 NC_005263.2 + 3193 0.68 0.282147
Target:  5'- aGCACGAg-GCCGGUgaGCCGGCccGGCGc -3'
miRNA:   3'- -UGUGCUgaUGGCCG--UGGCCGc-CCGUc -5'
24110 3' -61.1 NC_005263.2 + 19755 0.68 0.274623
Target:  5'- gGCGCG-CUGgCGGCgcucgugGCCGuGUGGGCAa -3'
miRNA:   3'- -UGUGCuGAUgGCCG-------UGGC-CGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 20570 0.69 0.231058
Target:  5'- uGCcCGGcCUGCCGGCcguGCCGaCGGGCAc -3'
miRNA:   3'- -UGuGCU-GAUGGCCG---UGGCcGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 1932 0.77 0.063063
Target:  5'- uGCACGAgCgcGCCGGCACCGGCGacgccGGCAa -3'
miRNA:   3'- -UGUGCU-Ga-UGGCCGUGGCCGC-----CCGUc -5'
24110 3' -61.1 NC_005263.2 + 14161 0.68 0.2753
Target:  5'- -gGCGACUucggGCCGGCgGCCGGUGuGCGc -3'
miRNA:   3'- ugUGCUGA----UGGCCG-UGGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 10154 0.74 0.116123
Target:  5'- gGCGCGGCaucgGCCGGUugcgcaccggcuGCCGGCGGcGCGc -3'
miRNA:   3'- -UGUGCUGa---UGGCCG------------UGGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 2378 0.69 0.22872
Target:  5'- gACGCGGCguaacccaugaCGGCGCCGGCGGucGCu- -3'
miRNA:   3'- -UGUGCUGaug--------GCCGUGGCCGCC--CGuc -5'
24110 3' -61.1 NC_005263.2 + 15381 0.68 0.2753
Target:  5'- aGCGCGuACguugcAUUGGCGauccgcaCGGCGGGCAGc -3'
miRNA:   3'- -UGUGC-UGa----UGGCCGUg------GCCGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 4652 0.67 0.318407
Target:  5'- uCAUGGCgACgGGCagGCCGGCGcGCGGg -3'
miRNA:   3'- uGUGCUGaUGgCCG--UGGCCGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 15457 0.73 0.125663
Target:  5'- aGCGCGAaaugagcgacgauUUGCCGuGCugCGGCGGcGCGGu -3'
miRNA:   3'- -UGUGCU-------------GAUGGC-CGugGCCGCC-CGUC- -5'
24110 3' -61.1 NC_005263.2 + 22473 0.7 0.208031
Target:  5'- uCACGAUUgcuucuccuugucGCCGGCGgCGGCcGGCGGc -3'
miRNA:   3'- uGUGCUGA-------------UGGCCGUgGCCGcCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.