miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24110 3' -61.1 NC_005263.2 + 5226 0.69 0.236392
Target:  5'- cGCGCGGCacGCCauugacgcgaucaGGCGCCGucaucaGCGGGCGGu -3'
miRNA:   3'- -UGUGCUGa-UGG-------------CCGUGGC------CGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 20972 0.68 0.303496
Target:  5'- gGCACGAaaGCCGGUACgGGUucGGuGCAa -3'
miRNA:   3'- -UGUGCUgaUGGCCGUGgCCG--CC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 45718 0.68 0.296245
Target:  5'- -aGCGACcGCCGGCGCCGucaUGGGUu- -3'
miRNA:   3'- ugUGCUGaUGGCCGUGGCc--GCCCGuc -5'
24110 3' -61.1 NC_005263.2 + 17317 0.68 0.289129
Target:  5'- cGCGCGAauucggcCCGGCGCCGGUGgcuucgacguucGGCAu -3'
miRNA:   3'- -UGUGCUgau----GGCCGUGGCCGC------------CCGUc -5'
24110 3' -61.1 NC_005263.2 + 24793 0.68 0.289129
Target:  5'- -gGCGGCUcGCCgGGCGUCGGCGGcGCGu -3'
miRNA:   3'- ugUGCUGA-UGG-CCGUGGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 8876 0.68 0.28702
Target:  5'- uACGCGgcccguGCUGCCGGUgcagcgcgcgcaauACUGGC-GGCAGg -3'
miRNA:   3'- -UGUGC------UGAUGGCCG--------------UGGCCGcCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 24978 0.68 0.281457
Target:  5'- aACACGAUgcugGCCGGC-CUGGCcgcaaccGGGUAu -3'
miRNA:   3'- -UGUGCUGa---UGGCCGuGGCCG-------CCCGUc -5'
24110 3' -61.1 NC_005263.2 + 37933 0.68 0.2753
Target:  5'- gGCGCG-CcGCCGGCAgCCGGUGcGCAa -3'
miRNA:   3'- -UGUGCuGaUGGCCGU-GGCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 28934 0.69 0.255558
Target:  5'- cGCGCGGCcacgaGCC-GCGCCGGCGGauGCAc -3'
miRNA:   3'- -UGUGCUGa----UGGcCGUGGCCGCC--CGUc -5'
24110 3' -61.1 NC_005263.2 + 38300 0.67 0.326066
Target:  5'- cGCACGAaggcuaUGCC-GCACgCGGCGaGGCGc -3'
miRNA:   3'- -UGUGCUg-----AUGGcCGUG-GCCGC-CCGUc -5'
24110 3' -61.1 NC_005263.2 + 35635 0.67 0.333075
Target:  5'- uGCGCG-CcGCCGGUAucguguuCCGcGCGGGCGa -3'
miRNA:   3'- -UGUGCuGaUGGCCGU-------GGC-CGCCCGUc -5'
24110 3' -61.1 NC_005263.2 + 24676 0.67 0.349857
Target:  5'- uACACGAUcgggggcGCCGGUAaCGGCGGcGCGc -3'
miRNA:   3'- -UGUGCUGa------UGGCCGUgGCCGCC-CGUc -5'
24110 3' -61.1 NC_005263.2 + 20795 0.66 0.401042
Target:  5'- gGCGcCGACgcaAUgGGUcaaguuccugGCCGGCGcGGCAGg -3'
miRNA:   3'- -UGU-GCUGa--UGgCCG----------UGGCCGC-CCGUC- -5'
24110 3' -61.1 NC_005263.2 + 31255 0.66 0.392185
Target:  5'- cGCGCGGCg--CGGCGCC---GGGCAGg -3'
miRNA:   3'- -UGUGCUGaugGCCGUGGccgCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 24312 0.66 0.392185
Target:  5'- -gACGGCcGCCGGCACgGGCaucGCAa -3'
miRNA:   3'- ugUGCUGaUGGCCGUGgCCGcc-CGUc -5'
24110 3' -61.1 NC_005263.2 + 8816 0.66 0.374858
Target:  5'- cAUGCGcCUGCCGGcCGCuCGGCGuGCGa -3'
miRNA:   3'- -UGUGCuGAUGGCC-GUG-GCCGCcCGUc -5'
24110 3' -61.1 NC_005263.2 + 28141 0.66 0.374858
Target:  5'- uGCACG-CUGCCaGCGCCGagcacGCGaGCAGc -3'
miRNA:   3'- -UGUGCuGAUGGcCGUGGC-----CGCcCGUC- -5'
24110 3' -61.1 NC_005263.2 + 11756 0.66 0.366392
Target:  5'- gACGCGAC-ACCuGGCgACCacuCGGGCGGu -3'
miRNA:   3'- -UGUGCUGaUGG-CCG-UGGcc-GCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 6246 0.66 0.366392
Target:  5'- uCGCGGCcagGCgCGGUcguGCCGuCGGGCAGc -3'
miRNA:   3'- uGUGCUGa--UG-GCCG---UGGCcGCCCGUC- -5'
24110 3' -61.1 NC_005263.2 + 32857 0.66 0.358058
Target:  5'- gACACGucaaACgaguUCGauGUGCCGGCGGGCGGc -3'
miRNA:   3'- -UGUGC----UGau--GGC--CGUGGCCGCCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.