Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24110 | 3' | -61.1 | NC_005263.2 | + | 27678 | 0.77 | 0.070752 |
Target: 5'- aGCACGGCcgccuucuugugcgcGCCGGCGCCGGCGGccGCAu -3' miRNA: 3'- -UGUGCUGa--------------UGGCCGUGGCCGCC--CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 11756 | 0.66 | 0.366392 |
Target: 5'- gACGCGAC-ACCuGGCgACCacuCGGGCGGu -3' miRNA: 3'- -UGUGCUGaUGG-CCG-UGGcc-GCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28141 | 0.66 | 0.374858 |
Target: 5'- uGCACG-CUGCCaGCGCCGagcacGCGaGCAGc -3' miRNA: 3'- -UGUGCuGAUGGcCGUGGC-----CGCcCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 24793 | 0.68 | 0.289129 |
Target: 5'- -gGCGGCUcGCCgGGCGUCGGCGGcGCGu -3' miRNA: 3'- ugUGCUGA-UGG-CCGUGGCCGCC-CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 8876 | 0.68 | 0.28702 |
Target: 5'- uACGCGgcccguGCUGCCGGUgcagcgcgcgcaauACUGGC-GGCAGg -3' miRNA: 3'- -UGUGC------UGAUGGCCG--------------UGGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 46159 | 0.71 | 0.178391 |
Target: 5'- gACGCGGUUGCCGGCgucGCCGGUGccGGCGc -3' miRNA: 3'- -UGUGCUGAUGGCCG---UGGCCGC--CCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 16421 | 0.72 | 0.164804 |
Target: 5'- uACuCGGCgu-CGGCGCUGGCGcGGCGGg -3' miRNA: 3'- -UGuGCUGaugGCCGUGGCCGC-CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 10868 | 0.72 | 0.160485 |
Target: 5'- uCGCGGCggaACuCGGCACCGGCGcGCGu -3' miRNA: 3'- uGUGCUGa--UG-GCCGUGGCCGCcCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 18155 | 0.71 | 0.187993 |
Target: 5'- uCACaGCUAUCGGCGgCGGCGuuGGCGGc -3' miRNA: 3'- uGUGcUGAUGGCCGUgGCCGC--CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 35525 | 0.77 | 0.070555 |
Target: 5'- cGCGcCGACUGcgcCCGGCGgCGcGCGGGCGGg -3' miRNA: 3'- -UGU-GCUGAU---GGCCGUgGC-CGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 17393 | 0.78 | 0.056343 |
Target: 5'- uGC-CGGCgcgGCCGcGCGCCuGGCGGGCGGu -3' miRNA: 3'- -UGuGCUGa--UGGC-CGUGG-CCGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 48007 | 1.08 | 0.000261 |
Target: 5'- gACACGACUACCGGCACCGGCGGGCAGg -3' miRNA: 3'- -UGUGCUGAUGGCCGUGGCCGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 17733 | 0.71 | 0.192963 |
Target: 5'- cGCAUggGGCUcgcACuCGGCGCCGGC-GGCAGc -3' miRNA: 3'- -UGUG--CUGA---UG-GCCGUGGCCGcCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 3338 | 0.7 | 0.219567 |
Target: 5'- uGCGCG-CcGCCGGCGCCGcGCGcGGUc- -3' miRNA: 3'- -UGUGCuGaUGGCCGUGGC-CGC-CCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 897 | 0.7 | 0.214007 |
Target: 5'- aGCGCGGCggUCGcCGCCGGCGGGUu- -3' miRNA: 3'- -UGUGCUGauGGCcGUGGCCGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28787 | 0.7 | 0.22525 |
Target: 5'- gACAuCGACcACCGcacaGCCGGCGGGCc- -3' miRNA: 3'- -UGU-GCUGaUGGCcg--UGGCCGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 5226 | 0.69 | 0.236392 |
Target: 5'- cGCGCGGCacGCCauugacgcgaucaGGCGCCGucaucaGCGGGCGGu -3' miRNA: 3'- -UGUGCUGa-UGG-------------CCGUGGC------CGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28934 | 0.69 | 0.255558 |
Target: 5'- cGCGCGGCcacgaGCC-GCGCCGGCGGauGCAc -3' miRNA: 3'- -UGUGCUGa----UGGcCGUGGCCGCC--CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 37933 | 0.68 | 0.2753 |
Target: 5'- gGCGCG-CcGCCGGCAgCCGGUGcGCAa -3' miRNA: 3'- -UGUGCuGaUGGCCGU-GGCCGCcCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 24978 | 0.68 | 0.281457 |
Target: 5'- aACACGAUgcugGCCGGC-CUGGCcgcaaccGGGUAu -3' miRNA: 3'- -UGUGCUGa---UGGCCGuGGCCG-------CCCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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