Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24110 | 3' | -61.1 | NC_005263.2 | + | 48007 | 1.08 | 0.000261 |
Target: 5'- gACACGACUACCGGCACCGGCGGGCAGg -3' miRNA: 3'- -UGUGCUGAUGGCCGUGGCCGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 47220 | 0.67 | 0.326066 |
Target: 5'- -gGCGACcGCCGcgcugaacgaaGCGCCGGCcGGCAc -3' miRNA: 3'- ugUGCUGaUGGC-----------CGUGGCCGcCCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 46159 | 0.71 | 0.178391 |
Target: 5'- gACGCGGUUGCCGGCgucGCCGGUGccGGCGc -3' miRNA: 3'- -UGUGCUGAUGGCCG---UGGCCGC--CCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 45718 | 0.68 | 0.296245 |
Target: 5'- -aGCGACcGCCGGCGCCGucaUGGGUu- -3' miRNA: 3'- ugUGCUGaUGGCCGUGGCc--GCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 44762 | 0.73 | 0.126004 |
Target: 5'- cGCuCGACcgcGCgCGGCGCCGGCGGcgcGCAGa -3' miRNA: 3'- -UGuGCUGa--UG-GCCGUGGCCGCC---CGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 43052 | 0.7 | 0.203249 |
Target: 5'- gGCGCGACaaugGCCcGCGuuGGCGGGUu- -3' miRNA: 3'- -UGUGCUGa---UGGcCGUggCCGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 42003 | 0.67 | 0.318407 |
Target: 5'- cACAUGACgUGCCGGCAgugCGGCcGGCc- -3' miRNA: 3'- -UGUGCUG-AUGGCCGUg--GCCGcCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 38300 | 0.67 | 0.326066 |
Target: 5'- cGCACGAaggcuaUGCC-GCACgCGGCGaGGCGc -3' miRNA: 3'- -UGUGCUg-----AUGGcCGUG-GCCGC-CCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 37933 | 0.68 | 0.2753 |
Target: 5'- gGCGCG-CcGCCGGCAgCCGGUGcGCAa -3' miRNA: 3'- -UGUGCuGaUGGCCGU-GGCCGCcCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 37706 | 0.68 | 0.296245 |
Target: 5'- cGCGCGccggacccgcucGCcgGCCGGC-CCGGCGcguGGCGGc -3' miRNA: 3'- -UGUGC------------UGa-UGGCCGuGGCCGC---CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 35635 | 0.67 | 0.333075 |
Target: 5'- uGCGCG-CcGCCGGUAucguguuCCGcGCGGGCGa -3' miRNA: 3'- -UGUGCuGaUGGCCGU-------GGC-CGCCCGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 35525 | 0.77 | 0.070555 |
Target: 5'- cGCGcCGACUGcgcCCGGCGgCGcGCGGGCGGg -3' miRNA: 3'- -UGU-GCUGAU---GGCCGUgGC-CGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 32857 | 0.66 | 0.358058 |
Target: 5'- gACACGucaaACgaguUCGauGUGCCGGCGGGCGGc -3' miRNA: 3'- -UGUGC----UGau--GGC--CGUGGCCGCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 32459 | 0.67 | 0.326066 |
Target: 5'- gACGCGACgaucgcguagAUCGGCGUCGGCGcauucagcgacGGCAGu -3' miRNA: 3'- -UGUGCUGa---------UGGCCGUGGCCGC-----------CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 32003 | 0.67 | 0.349857 |
Target: 5'- --uCGGCUGCCGuaGCUGcGCGGGUg- -3' miRNA: 3'- uguGCUGAUGGCcgUGGC-CGCCCGuc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 31255 | 0.66 | 0.392185 |
Target: 5'- cGCGCGGCg--CGGCGCC---GGGCAGg -3' miRNA: 3'- -UGUGCUGaugGCCGUGGccgCCCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 30355 | 0.66 | 0.358058 |
Target: 5'- aGCGCGGCcgcgcugccGCCGGCGCCGaGUGcgagccccaugcGGCGGc -3' miRNA: 3'- -UGUGCUGa--------UGGCCGUGGC-CGC------------CCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 29204 | 0.67 | 0.341791 |
Target: 5'- cGCuCGACgcagGCCGGCGCguauuugccguCGGCGcGCAGc -3' miRNA: 3'- -UGuGCUGa---UGGCCGUG-----------GCCGCcCGUC- -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28934 | 0.69 | 0.255558 |
Target: 5'- cGCGCGGCcacgaGCC-GCGCCGGCGGauGCAc -3' miRNA: 3'- -UGUGCUGa----UGGcCGUGGCCGCC--CGUc -5' |
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24110 | 3' | -61.1 | NC_005263.2 | + | 28787 | 0.7 | 0.22525 |
Target: 5'- gACAuCGACcACCGcacaGCCGGCGGGCc- -3' miRNA: 3'- -UGU-GCUGaUGGCcg--UGGCCGCCCGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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