miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24111 5' -51.3 NC_005263.2 + 18456 0.66 0.89265
Target:  5'- cGCGUGAagcaGCCGCG-CGGcUGGUACa -3'
miRNA:   3'- -CGCACUgc--UGGUGUaGCUuGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 20947 0.66 0.899808
Target:  5'- gGUGaUGACGGCCGCgcgcuGUCGGacaucgccgacGCGGcUGCGc -3'
miRNA:   3'- -CGC-ACUGCUGGUG-----UAGCU-----------UGCC-AUGC- -5'
24111 5' -51.3 NC_005263.2 + 21226 0.69 0.787448
Target:  5'- uCGUcGAcCGGCUuucGCAUCGAcggcGCGGUGCGc -3'
miRNA:   3'- cGCA-CU-GCUGG---UGUAGCU----UGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 22374 0.7 0.70292
Target:  5'- aGCGUGucgauCGGCgGCAUCGGGCaGGccGCGa -3'
miRNA:   3'- -CGCACu----GCUGgUGUAGCUUG-CCa-UGC- -5'
24111 5' -51.3 NC_005263.2 + 22533 0.67 0.885219
Target:  5'- aGCGUGACgGGCgGCG-CGGACGccgACGu -3'
miRNA:   3'- -CGCACUG-CUGgUGUaGCUUGCca-UGC- -5'
24111 5' -51.3 NC_005263.2 + 22869 0.68 0.835236
Target:  5'- aGCGUGACGGauuCGUCGGcCGGgauCGg -3'
miRNA:   3'- -CGCACUGCUgguGUAGCUuGCCau-GC- -5'
24111 5' -51.3 NC_005263.2 + 23922 0.67 0.876735
Target:  5'- aGCGUGaccgucgcuuugGCGGCUugcGCGUCGugagcguGACGGUGCc -3'
miRNA:   3'- -CGCAC------------UGCUGG---UGUAGC-------UUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 24352 0.68 0.816712
Target:  5'- aCGUGACGAaucguuCUGCG-CGAACGGcACGa -3'
miRNA:   3'- cGCACUGCU------GGUGUaGCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 24787 0.67 0.852876
Target:  5'- gGCGUcGGCGGCUcgccggGCGUCG-GCGGcGCGu -3'
miRNA:   3'- -CGCA-CUGCUGG------UGUAGCuUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 25430 0.66 0.9196
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGcACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 26198 0.69 0.797385
Target:  5'- cGCGcGGCGGCCGCG-CGAuGCGGcgGCc -3'
miRNA:   3'- -CGCaCUGCUGGUGUaGCU-UGCCa-UGc -5'
24111 5' -51.3 NC_005263.2 + 27344 0.66 0.891919
Target:  5'- aGCGgcGCGGCCAUGUuacaggccgccagCGAGCGGcGCGg -3'
miRNA:   3'- -CGCacUGCUGGUGUA-------------GCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 27451 0.76 0.394615
Target:  5'- ---cGACGGCCGCGaCGAGCGGcGCGg -3'
miRNA:   3'- cgcaCUGCUGGUGUaGCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 27776 0.66 0.899808
Target:  5'- uGCGgcGGCaGGCCAUgcuUCGcGCGGUACa -3'
miRNA:   3'- -CGCa-CUG-CUGGUGu--AGCuUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 28053 0.69 0.767082
Target:  5'- aGCGUGugcugaACGACCGCcgCGAuccauUGcGUGCGg -3'
miRNA:   3'- -CGCAC------UGCUGGUGuaGCUu----GC-CAUGC- -5'
24111 5' -51.3 NC_005263.2 + 29610 0.73 0.536385
Target:  5'- cGCGaGGCGuugCGCuUCGGACGGUACGa -3'
miRNA:   3'- -CGCaCUGCug-GUGuAGCUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 29828 0.67 0.877519
Target:  5'- cGCGcacGACGAgCGCAUCGccCGGaACGc -3'
miRNA:   3'- -CGCa--CUGCUgGUGUAGCuuGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 30039 0.69 0.797385
Target:  5'- gGCGUGACGA-----UCGAGUGGUGCGu -3'
miRNA:   3'- -CGCACUGCUgguguAGCUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 30409 0.66 0.906688
Target:  5'- aGCGcGAcCGGCUGCAgcaGGuCGGUGCGg -3'
miRNA:   3'- -CGCaCU-GCUGGUGUag-CUuGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 32926 0.68 0.807144
Target:  5'- cGCGcGGCGGCuCGCGUCGAucacuGCGGa--- -3'
miRNA:   3'- -CGCaCUGCUG-GUGUAGCU-----UGCCaugc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.