miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24111 5' -51.3 NC_005263.2 + 655 0.66 0.89265
Target:  5'- aCGUGcCGGCCAgAUCGAACGccuCa -3'
miRNA:   3'- cGCACuGCUGGUgUAGCUUGCcauGc -5'
24111 5' -51.3 NC_005263.2 + 2025 0.68 0.82608
Target:  5'- aCGUcACGGCCGCAUCGAucACGucgACGc -3'
miRNA:   3'- cGCAcUGCUGGUGUAGCU--UGCca-UGC- -5'
24111 5' -51.3 NC_005263.2 + 3437 0.68 0.844171
Target:  5'- cCGUcGCGACCugGUUGAccuGCGcGUGCa -3'
miRNA:   3'- cGCAcUGCUGGugUAGCU---UGC-CAUGc -5'
24111 5' -51.3 NC_005263.2 + 3604 0.66 0.9196
Target:  5'- -gGUGACGGCCAggaugccgcCGUCGGucaGGUAgGc -3'
miRNA:   3'- cgCACUGCUGGU---------GUAGCUug-CCAUgC- -5'
24111 5' -51.3 NC_005263.2 + 4064 0.69 0.756678
Target:  5'- cCGUGuuccaGAuCCAgaaGUCGAACGGUGCGu -3'
miRNA:   3'- cGCACug---CU-GGUg--UAGCUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 4417 0.66 0.89265
Target:  5'- cGUGUGACGGCUcccaauccucguACGUCaccucauuGAACaGUGCGa -3'
miRNA:   3'- -CGCACUGCUGG------------UGUAG--------CUUGcCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 4743 0.66 0.89265
Target:  5'- cGCGaGcACGccagcuuucACCgACAUCGAACGGUAuCGa -3'
miRNA:   3'- -CGCaC-UGC---------UGG-UGUAGCUUGCCAU-GC- -5'
24111 5' -51.3 NC_005263.2 + 5246 0.68 0.815764
Target:  5'- --aUGAaccCGGCCGgGUCGAacgugauGCGGUACGg -3'
miRNA:   3'- cgcACU---GCUGGUgUAGCU-------UGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 6472 0.67 0.85029
Target:  5'- aGCGcGugGGCCGCAgugcaaccaggcagUCGAcgaACGGcGCGu -3'
miRNA:   3'- -CGCaCugCUGGUGU--------------AGCU---UGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 6926 0.7 0.735486
Target:  5'- cGCGUcGAacaGACCGCAcugcgUGAGCGGaACGg -3'
miRNA:   3'- -CGCA-CUg--CUGGUGUa----GCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 7085 0.66 0.89265
Target:  5'- uCGUcGACGAgCACgaaGUCGAACGGccCGa -3'
miRNA:   3'- cGCA-CUGCUgGUG---UAGCUUGCCauGC- -5'
24111 5' -51.3 NC_005263.2 + 7366 0.69 0.787448
Target:  5'- -gGUGACGAUCGCggCGAucgGGUugGu -3'
miRNA:   3'- cgCACUGCUGGUGuaGCUug-CCAugC- -5'
24111 5' -51.3 NC_005263.2 + 8269 0.79 0.2585
Target:  5'- cGCGUucgGACGGCCACAgcgCGAGCGGcguCGg -3'
miRNA:   3'- -CGCA---CUGCUGGUGUa--GCUUGCCau-GC- -5'
24111 5' -51.3 NC_005263.2 + 8521 0.74 0.514843
Target:  5'- aCGUGGCGACCuucguCGUCGGcucgGCGGUGa- -3'
miRNA:   3'- cGCACUGCUGGu----GUAGCU----UGCCAUgc -5'
24111 5' -51.3 NC_005263.2 + 8954 0.66 0.906688
Target:  5'- cCGUGuCGAgCaACGUCGccgacACGGUGCGc -3'
miRNA:   3'- cGCACuGCUgG-UGUAGCu----UGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 9898 0.73 0.525573
Target:  5'- ---cGGCGGCCAUcgCGAGCGGUGu- -3'
miRNA:   3'- cgcaCUGCUGGUGuaGCUUGCCAUgc -5'
24111 5' -51.3 NC_005263.2 + 11758 0.85 0.116329
Target:  5'- cGCGacaccUGGCGACCAC-UCGGGCGGUGCa -3'
miRNA:   3'- -CGC-----ACUGCUGGUGuAGCUUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 13603 0.75 0.426868
Target:  5'- gGCGUGACGACgCccacuaagacgauucGCGUCcaGAAUGGUGCGu -3'
miRNA:   3'- -CGCACUGCUG-G---------------UGUAG--CUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 16361 0.71 0.636171
Target:  5'- aGCGc-GCGGCCGCGUCGcuCGGcgGCGg -3'
miRNA:   3'- -CGCacUGCUGGUGUAGCuuGCCa-UGC- -5'
24111 5' -51.3 NC_005263.2 + 17379 0.7 0.718217
Target:  5'- cGCGUGaagcugucugccggcGCGGCCGCGcgccuggCGGGCGGUGuCGc -3'
miRNA:   3'- -CGCAC---------------UGCUGGUGUa------GCUUGCCAU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.