miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24111 5' -51.3 NC_005263.2 + 47852 1.11 0.002219
Target:  5'- gGCGUGACGACCACAUCGAACGGUACGc -3'
miRNA:   3'- -CGCACUGCUGGUGUAGCUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 11758 0.85 0.116329
Target:  5'- cGCGacaccUGGCGACCAC-UCGGGCGGUGCa -3'
miRNA:   3'- -CGC-----ACUGCUGGUGuAGCUUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 8269 0.79 0.2585
Target:  5'- cGCGUucgGACGGCCACAgcgCGAGCGGcguCGg -3'
miRNA:   3'- -CGCA---CUGCUGGUGUa--GCUUGCCau-GC- -5'
24111 5' -51.3 NC_005263.2 + 47761 0.77 0.325227
Target:  5'- aGCGccGACGGgCAUuUCGGGCGGUACGg -3'
miRNA:   3'- -CGCa-CUGCUgGUGuAGCUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 27451 0.76 0.394615
Target:  5'- ---cGACGGCCGCGaCGAGCGGcGCGg -3'
miRNA:   3'- cgcaCUGCUGGUGUaGCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 13603 0.75 0.426868
Target:  5'- gGCGUGACGACgCccacuaagacgauucGCGUCcaGAAUGGUGCGu -3'
miRNA:   3'- -CGCACUGCUG-G---------------UGUAG--CUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 8521 0.74 0.514843
Target:  5'- aCGUGGCGACCuucguCGUCGGcucgGCGGUGa- -3'
miRNA:   3'- cGCACUGCUGGu----GUAGCU----UGCCAUgc -5'
24111 5' -51.3 NC_005263.2 + 9898 0.73 0.525573
Target:  5'- ---cGGCGGCCAUcgCGAGCGGUGu- -3'
miRNA:   3'- cgcaCUGCUGGUGuaGCUUGCCAUgc -5'
24111 5' -51.3 NC_005263.2 + 29610 0.73 0.536385
Target:  5'- cGCGaGGCGuugCGCuUCGGACGGUACGa -3'
miRNA:   3'- -CGCaCUGCug-GUGuAGCUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 36108 0.72 0.618251
Target:  5'- cGCGuUGAUGGCCGCGUCGuacuuGCGcucgaucgagcgcaaGUACGg -3'
miRNA:   3'- -CGC-ACUGCUGGUGUAGCu----UGC---------------CAUGC- -5'
24111 5' -51.3 NC_005263.2 + 41167 0.72 0.624969
Target:  5'- gGCGUGgGCGGCCGuCGUCGAuACGuUGCGc -3'
miRNA:   3'- -CGCAC-UGCUGGU-GUAGCU-UGCcAUGC- -5'
24111 5' -51.3 NC_005263.2 + 16361 0.71 0.636171
Target:  5'- aGCGc-GCGGCCGCGUCGcuCGGcgGCGg -3'
miRNA:   3'- -CGCacUGCUGGUGUAGCuuGCCa-UGC- -5'
24111 5' -51.3 NC_005263.2 + 34002 0.71 0.680833
Target:  5'- cGCGacGGCGACCGCcgCGcAGcCGGUACc -3'
miRNA:   3'- -CGCa-CUGCUGGUGuaGC-UU-GCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 22374 0.7 0.70292
Target:  5'- aGCGUGucgauCGGCgGCAUCGGGCaGGccGCGa -3'
miRNA:   3'- -CGCACu----GCUGgUGUAGCUUG-CCa-UGC- -5'
24111 5' -51.3 NC_005263.2 + 17379 0.7 0.718217
Target:  5'- cGCGUGaagcugucugccggcGCGGCCGCGcgccuggCGGGCGGUGuCGc -3'
miRNA:   3'- -CGCAC---------------UGCUGGUGUa------GCUUGCCAU-GC- -5'
24111 5' -51.3 NC_005263.2 + 6926 0.7 0.735486
Target:  5'- cGCGUcGAacaGACCGCAcugcgUGAGCGGaACGg -3'
miRNA:   3'- -CGCA-CUg--CUGGUGUa----GCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 42054 0.69 0.756678
Target:  5'- cGCGUGaaGCGcGCCGCcaaCGAACGGgGCGu -3'
miRNA:   3'- -CGCAC--UGC-UGGUGua-GCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 41736 0.69 0.756678
Target:  5'- cGCG-GGCGGCaACuUCGGGCGGcACGg -3'
miRNA:   3'- -CGCaCUGCUGgUGuAGCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 4064 0.69 0.756678
Target:  5'- cCGUGuuccaGAuCCAgaaGUCGAACGGUGCGu -3'
miRNA:   3'- cGCACug---CU-GGUg--UAGCUUGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 28053 0.69 0.767082
Target:  5'- aGCGUGugcugaACGACCGCcgCGAuccauUGcGUGCGg -3'
miRNA:   3'- -CGCAC------UGCUGGUGuaGCUu----GC-CAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.