miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24111 5' -51.3 NC_005263.2 + 8521 0.74 0.514843
Target:  5'- aCGUGGCGACCuucguCGUCGGcucgGCGGUGa- -3'
miRNA:   3'- cGCACUGCUGGu----GUAGCU----UGCCAUgc -5'
24111 5' -51.3 NC_005263.2 + 22869 0.68 0.835236
Target:  5'- aGCGUGACGGauuCGUCGGcCGGgauCGg -3'
miRNA:   3'- -CGCACUGCUgguGUAGCUuGCCau-GC- -5'
24111 5' -51.3 NC_005263.2 + 24352 0.68 0.816712
Target:  5'- aCGUGACGAaucguuCUGCG-CGAACGGcACGa -3'
miRNA:   3'- cGCACUGCU------GGUGUaGCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 43898 0.68 0.816712
Target:  5'- ---cGACGACC-CGUCGAccGCGcGUACu -3'
miRNA:   3'- cgcaCUGCUGGuGUAGCU--UGC-CAUGc -5'
24111 5' -51.3 NC_005263.2 + 32926 0.68 0.807144
Target:  5'- cGCGcGGCGGCuCGCGUCGAucacuGCGGa--- -3'
miRNA:   3'- -CGCaCUGCUG-GUGUAGCU-----UGCCaugc -5'
24111 5' -51.3 NC_005263.2 + 45257 0.69 0.777343
Target:  5'- gGCG-GGCGGgccggcCCGCAuUCGAACGGUGg- -3'
miRNA:   3'- -CGCaCUGCU------GGUGU-AGCUUGCCAUgc -5'
24111 5' -51.3 NC_005263.2 + 8954 0.66 0.906688
Target:  5'- cCGUGuCGAgCaACGUCGccgacACGGUGCGc -3'
miRNA:   3'- cGCACuGCUgG-UGUAGCu----UGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 27776 0.66 0.899808
Target:  5'- uGCGgcGGCaGGCCAUgcuUCGcGCGGUACa -3'
miRNA:   3'- -CGCa-CUG-CUGGUGu--AGCuUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 23922 0.67 0.876735
Target:  5'- aGCGUGaccgucgcuuugGCGGCUugcGCGUCGugagcguGACGGUGCc -3'
miRNA:   3'- -CGCAC------------UGCUGG---UGUAGC-------UUGCCAUGc -5'
24111 5' -51.3 NC_005263.2 + 36165 0.68 0.82608
Target:  5'- ---cGACGGCCuGCG-CGAcCGGUGCGa -3'
miRNA:   3'- cgcaCUGCUGG-UGUaGCUuGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 5246 0.68 0.815764
Target:  5'- --aUGAaccCGGCCGgGUCGAacgugauGCGGUACGg -3'
miRNA:   3'- cgcACU---GCUGGUgUAGCU-------UGCCAUGC- -5'
24111 5' -51.3 NC_005263.2 + 41736 0.69 0.756678
Target:  5'- cGCG-GGCGGCaACuUCGGGCGGcACGg -3'
miRNA:   3'- -CGCaCUGCUGgUGuAGCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 4743 0.66 0.89265
Target:  5'- cGCGaGcACGccagcuuucACCgACAUCGAACGGUAuCGa -3'
miRNA:   3'- -CGCaC-UGC---------UGG-UGUAGCUUGCCAU-GC- -5'
24111 5' -51.3 NC_005263.2 + 42054 0.69 0.756678
Target:  5'- cGCGUGaaGCGcGCCGCcaaCGAACGGgGCGu -3'
miRNA:   3'- -CGCAC--UGC-UGGUGua-GCUUGCCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 2025 0.68 0.82608
Target:  5'- aCGUcACGGCCGCAUCGAucACGucgACGc -3'
miRNA:   3'- cGCAcUGCUGGUGUAGCU--UGCca-UGC- -5'
24111 5' -51.3 NC_005263.2 + 20947 0.66 0.899808
Target:  5'- gGUGaUGACGGCCGCgcgcuGUCGGacaucgccgacGCGGcUGCGc -3'
miRNA:   3'- -CGC-ACUGCUGGUG-----UAGCU-----------UGCC-AUGC- -5'
24111 5' -51.3 NC_005263.2 + 25430 0.66 0.9196
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGcACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCaUGC- -5'
24111 5' -51.3 NC_005263.2 + 28053 0.69 0.767082
Target:  5'- aGCGUGugcugaACGACCGCcgCGAuccauUGcGUGCGg -3'
miRNA:   3'- -CGCAC------UGCUGGUGuaGCUu----GC-CAUGC- -5'
24111 5' -51.3 NC_005263.2 + 3437 0.68 0.844171
Target:  5'- cCGUcGCGACCugGUUGAccuGCGcGUGCa -3'
miRNA:   3'- cGCAcUGCUGGugUAGCU---UGC-CAUGc -5'
24111 5' -51.3 NC_005263.2 + 30039 0.69 0.797385
Target:  5'- gGCGUGACGA-----UCGAGUGGUGCGu -3'
miRNA:   3'- -CGCACUGCUgguguAGCUUGCCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.