Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24111 | 5' | -51.3 | NC_005263.2 | + | 6926 | 0.7 | 0.735486 |
Target: 5'- cGCGUcGAacaGACCGCAcugcgUGAGCGGaACGg -3' miRNA: 3'- -CGCA-CUg--CUGGUGUa----GCUUGCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 6472 | 0.67 | 0.85029 |
Target: 5'- aGCGcGugGGCCGCAgugcaaccaggcagUCGAcgaACGGcGCGu -3' miRNA: 3'- -CGCaCugCUGGUGU--------------AGCU---UGCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 42522 | 0.68 | 0.835236 |
Target: 5'- uGCGgaugcccGACGGCCGCAcaaUCGAGCuGaACGg -3' miRNA: 3'- -CGCa------CUGCUGGUGU---AGCUUGcCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 30039 | 0.69 | 0.797385 |
Target: 5'- gGCGUGACGA-----UCGAGUGGUGCGu -3' miRNA: 3'- -CGCACUGCUgguguAGCUUGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 42779 | 0.69 | 0.797385 |
Target: 5'- gGCGUGACGAUC-CAgcgCGAA-GGcGCGa -3' miRNA: 3'- -CGCACUGCUGGuGUa--GCUUgCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 26198 | 0.69 | 0.797385 |
Target: 5'- cGCGcGGCGGCCGCG-CGAuGCGGcgGCc -3' miRNA: 3'- -CGCaCUGCUGGUGUaGCU-UGCCa-UGc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 7366 | 0.69 | 0.787448 |
Target: 5'- -gGUGACGAUCGCggCGAucgGGUugGu -3' miRNA: 3'- cgCACUGCUGGUGuaGCUug-CCAugC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 21226 | 0.69 | 0.787448 |
Target: 5'- uCGUcGAcCGGCUuucGCAUCGAcggcGCGGUGCGc -3' miRNA: 3'- cGCA-CU-GCUGG---UGUAGCU----UGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 4064 | 0.69 | 0.756678 |
Target: 5'- cCGUGuuccaGAuCCAgaaGUCGAACGGUGCGu -3' miRNA: 3'- cGCACug---CU-GGUg--UAGCUUGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 24787 | 0.67 | 0.852876 |
Target: 5'- gGCGUcGGCGGCUcgccggGCGUCG-GCGGcGCGu -3' miRNA: 3'- -CGCA-CUGCUGG------UGUAGCuUGCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 39463 | 0.67 | 0.852876 |
Target: 5'- --cUGACGACCuACGUCGAcccguCGGUGa- -3' miRNA: 3'- cgcACUGCUGG-UGUAGCUu----GCCAUgc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 34378 | 0.67 | 0.861341 |
Target: 5'- gGCGguaacgccGCGAgCACGUCGGACGGcgACc -3' miRNA: 3'- -CGCac------UGCUgGUGUAGCUUGCCa-UGc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 30409 | 0.66 | 0.906688 |
Target: 5'- aGCGcGAcCGGCUGCAgcaGGuCGGUGCGg -3' miRNA: 3'- -CGCaCU-GCUGGUGUag-CUuGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 7085 | 0.66 | 0.89265 |
Target: 5'- uCGUcGACGAgCACgaaGUCGAACGGccCGa -3' miRNA: 3'- cGCA-CUGCUgGUG---UAGCUUGCCauGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 18456 | 0.66 | 0.89265 |
Target: 5'- cGCGUGAagcaGCCGCG-CGGcUGGUACa -3' miRNA: 3'- -CGCACUgc--UGGUGUaGCUuGCCAUGc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 4417 | 0.66 | 0.89265 |
Target: 5'- cGUGUGACGGCUcccaauccucguACGUCaccucauuGAACaGUGCGa -3' miRNA: 3'- -CGCACUGCUGG------------UGUAG--------CUUGcCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 655 | 0.66 | 0.89265 |
Target: 5'- aCGUGcCGGCCAgAUCGAACGccuCa -3' miRNA: 3'- cGCACuGCUGGUgUAGCUUGCcauGc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 27344 | 0.66 | 0.891919 |
Target: 5'- aGCGgcGCGGCCAUGUuacaggccgccagCGAGCGGcGCGg -3' miRNA: 3'- -CGCacUGCUGGUGUA-------------GCUUGCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 22533 | 0.67 | 0.885219 |
Target: 5'- aGCGUGACgGGCgGCG-CGGACGccgACGu -3' miRNA: 3'- -CGCACUG-CUGgUGUaGCUUGCca-UGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 29828 | 0.67 | 0.877519 |
Target: 5'- cGCGcacGACGAgCGCAUCGccCGGaACGc -3' miRNA: 3'- -CGCa--CUGCUgGUGUAGCuuGCCaUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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