Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24111 | 5' | -51.3 | NC_005263.2 | + | 47852 | 1.11 | 0.002219 |
Target: 5'- gGCGUGACGACCACAUCGAACGGUACGc -3' miRNA: 3'- -CGCACUGCUGGUGUAGCUUGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 47761 | 0.77 | 0.325227 |
Target: 5'- aGCGccGACGGgCAUuUCGGGCGGUACGg -3' miRNA: 3'- -CGCa-CUGCUgGUGuAGCUUGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 45257 | 0.69 | 0.777343 |
Target: 5'- gGCG-GGCGGgccggcCCGCAuUCGAACGGUGg- -3' miRNA: 3'- -CGCaCUGCU------GGUGU-AGCUUGCCAUgc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 43898 | 0.68 | 0.816712 |
Target: 5'- ---cGACGACC-CGUCGAccGCGcGUACu -3' miRNA: 3'- cgcaCUGCUGGuGUAGCU--UGC-CAUGc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 42779 | 0.69 | 0.797385 |
Target: 5'- gGCGUGACGAUC-CAgcgCGAA-GGcGCGa -3' miRNA: 3'- -CGCACUGCUGGuGUa--GCUUgCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 42522 | 0.68 | 0.835236 |
Target: 5'- uGCGgaugcccGACGGCCGCAcaaUCGAGCuGaACGg -3' miRNA: 3'- -CGCa------CUGCUGGUGU---AGCUUGcCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 42054 | 0.69 | 0.756678 |
Target: 5'- cGCGUGaaGCGcGCCGCcaaCGAACGGgGCGu -3' miRNA: 3'- -CGCAC--UGC-UGGUGua-GCUUGCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 41736 | 0.69 | 0.756678 |
Target: 5'- cGCG-GGCGGCaACuUCGGGCGGcACGg -3' miRNA: 3'- -CGCaCUGCUGgUGuAGCUUGCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 41167 | 0.72 | 0.624969 |
Target: 5'- gGCGUGgGCGGCCGuCGUCGAuACGuUGCGc -3' miRNA: 3'- -CGCAC-UGCUGGU-GUAGCU-UGCcAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 39463 | 0.67 | 0.852876 |
Target: 5'- --cUGACGACCuACGUCGAcccguCGGUGa- -3' miRNA: 3'- cgcACUGCUGG-UGUAGCUu----GCCAUgc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 36165 | 0.68 | 0.82608 |
Target: 5'- ---cGACGGCCuGCG-CGAcCGGUGCGa -3' miRNA: 3'- cgcaCUGCUGG-UGUaGCUuGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 36108 | 0.72 | 0.618251 |
Target: 5'- cGCGuUGAUGGCCGCGUCGuacuuGCGcucgaucgagcgcaaGUACGg -3' miRNA: 3'- -CGC-ACUGCUGGUGUAGCu----UGC---------------CAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 34378 | 0.67 | 0.861341 |
Target: 5'- gGCGguaacgccGCGAgCACGUCGGACGGcgACc -3' miRNA: 3'- -CGCac------UGCUgGUGUAGCUUGCCa-UGc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 34002 | 0.71 | 0.680833 |
Target: 5'- cGCGacGGCGACCGCcgCGcAGcCGGUACc -3' miRNA: 3'- -CGCa-CUGCUGGUGuaGC-UU-GCCAUGc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 32926 | 0.68 | 0.807144 |
Target: 5'- cGCGcGGCGGCuCGCGUCGAucacuGCGGa--- -3' miRNA: 3'- -CGCaCUGCUG-GUGUAGCU-----UGCCaugc -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 30409 | 0.66 | 0.906688 |
Target: 5'- aGCGcGAcCGGCUGCAgcaGGuCGGUGCGg -3' miRNA: 3'- -CGCaCU-GCUGGUGUag-CUuGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 30039 | 0.69 | 0.797385 |
Target: 5'- gGCGUGACGA-----UCGAGUGGUGCGu -3' miRNA: 3'- -CGCACUGCUgguguAGCUUGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 29828 | 0.67 | 0.877519 |
Target: 5'- cGCGcacGACGAgCGCAUCGccCGGaACGc -3' miRNA: 3'- -CGCa--CUGCUgGUGUAGCuuGCCaUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 29610 | 0.73 | 0.536385 |
Target: 5'- cGCGaGGCGuugCGCuUCGGACGGUACGa -3' miRNA: 3'- -CGCaCUGCug-GUGuAGCUUGCCAUGC- -5' |
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24111 | 5' | -51.3 | NC_005263.2 | + | 28053 | 0.69 | 0.767082 |
Target: 5'- aGCGUGugcugaACGACCGCcgCGAuccauUGcGUGCGg -3' miRNA: 3'- -CGCAC------UGCUGGUGuaGCUu----GC-CAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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