miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 22467 0.67 0.715801
Target:  5'- gGCAGCGacagcGCGAUCAACUaCGgCGCGa -3'
miRNA:   3'- gCGUUGC-----CGUUAGUUGGaGCgGUGCc -5'
24112 3' -53.6 NC_005263.2 + 12492 0.67 0.715801
Target:  5'- gCGCAuuGCGGCAuccugcgcgcCGGCUUCG-CGCGGg -3'
miRNA:   3'- -GCGU--UGCCGUua--------GUUGGAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 17139 0.67 0.715801
Target:  5'- gGCuucAUGGUcGUCGACgUCGgCACGGc -3'
miRNA:   3'- gCGu--UGCCGuUAGUUGgAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 1860 0.67 0.715801
Target:  5'- gGCGACGuGCGGUUcuggcgcGCCUgGCC-CGGa -3'
miRNA:   3'- gCGUUGC-CGUUAGu------UGGAgCGGuGCC- -5'
24112 3' -53.6 NC_005263.2 + 38539 0.67 0.715801
Target:  5'- gGCAGCGaGCGcgCcGCCUggcaaGCCGCGa -3'
miRNA:   3'- gCGUUGC-CGUuaGuUGGAg----CGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 20091 0.67 0.704927
Target:  5'- cCG-AAUGGCGucugGUCGACCagcgUCGCCGCGc -3'
miRNA:   3'- -GCgUUGCCGU----UAGUUGG----AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 45701 0.67 0.704927
Target:  5'- cCGCuguACGGCGAccaagCGACCgccggcgcCGUCAUGGg -3'
miRNA:   3'- -GCGu--UGCCGUUa----GUUGGa-------GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 27891 0.67 0.704927
Target:  5'- gGCGGCGcGCAGUCGggcaaaGCaCUCGaCgGCGGc -3'
miRNA:   3'- gCGUUGC-CGUUAGU------UG-GAGC-GgUGCC- -5'
24112 3' -53.6 NC_005263.2 + 40722 0.67 0.704927
Target:  5'- uCGCGACcGCAAagaacacCAACCcgaUCGCCGCGa -3'
miRNA:   3'- -GCGUUGcCGUUa------GUUGG---AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 42009 0.67 0.704927
Target:  5'- aCGUGcCGGCAGUgCGGCCg-GCCGCGc -3'
miRNA:   3'- -GCGUuGCCGUUA-GUUGGagCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 23806 0.67 0.704927
Target:  5'- uGcCGGCGGCcGUCuuGAUCgUCGCCGCGa -3'
miRNA:   3'- gC-GUUGCCGuUAG--UUGG-AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 29718 0.67 0.704927
Target:  5'- cCGCGugcCGGCGAagAACUUCGCCuuGa -3'
miRNA:   3'- -GCGUu--GCCGUUagUUGGAGCGGugCc -5'
24112 3' -53.6 NC_005263.2 + 34001 0.67 0.704927
Target:  5'- uCGCGACGGCGA-CcGCCgCGCagcCGGu -3'
miRNA:   3'- -GCGUUGCCGUUaGuUGGaGCGgu-GCC- -5'
24112 3' -53.6 NC_005263.2 + 44665 0.67 0.704927
Target:  5'- uGC-ACGcGCAgGUCAACCaggUCGCgACGGc -3'
miRNA:   3'- gCGuUGC-CGU-UAGUUGG---AGCGgUGCC- -5'
24112 3' -53.6 NC_005263.2 + 39139 0.67 0.703836
Target:  5'- aCGuCGGCGGCAccguGUCGGCgacguugCUCGaCACGGg -3'
miRNA:   3'- -GC-GUUGCCGU----UAGUUG-------GAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 3350 0.67 0.702744
Target:  5'- gCGCcGCGcGCGGUCGAgCgaccagacagugCGCCAUGGu -3'
miRNA:   3'- -GCGuUGC-CGUUAGUUgGa-----------GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 7139 0.67 0.70165
Target:  5'- aCGUAACGGCuauGUCAagcgACCcuauugcgcggccaUCGCCGCu- -3'
miRNA:   3'- -GCGUUGCCGu--UAGU----UGG--------------AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 34570 0.68 0.693981
Target:  5'- gCGCAGCcaCGGUCAGCgUCGCUugauuacucGCGGa -3'
miRNA:   3'- -GCGUUGccGUUAGUUGgAGCGG---------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 45060 0.68 0.693981
Target:  5'- uCGuCAACGGCGGUCAACU--GCCguACGa -3'
miRNA:   3'- -GC-GUUGCCGUUAGUUGGagCGG--UGCc -5'
24112 3' -53.6 NC_005263.2 + 3926 0.68 0.693981
Target:  5'- uGCAcCGGCAGgccuagcGCCUCGCaCGCGc -3'
miRNA:   3'- gCGUuGCCGUUagu----UGGAGCG-GUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.