miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 35993 0.66 0.757289
Target:  5'- gCGUAAUGGCGcgCGcgccgcugcgcauGCCagGCCGCGa -3'
miRNA:   3'- -GCGUUGCCGUuaGU-------------UGGagCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 26142 0.66 0.757289
Target:  5'- aCGU--UGGCGAUCAACugcgcaaacagcgCUUGCCACGcGg -3'
miRNA:   3'- -GCGuuGCCGUUAGUUG-------------GAGCGGUGC-C- -5'
24112 3' -53.6 NC_005263.2 + 17752 0.67 0.747866
Target:  5'- gCGcCGGCGGCAGcgCGGCCgCGCU-CGGc -3'
miRNA:   3'- -GC-GUUGCCGUUa-GUUGGaGCGGuGCC- -5'
24112 3' -53.6 NC_005263.2 + 41753 0.67 0.747866
Target:  5'- gGCGgcACGGCGcgAUCAACgaggagaUCGgCGCGGg -3'
miRNA:   3'- gCGU--UGCCGU--UAGUUGg------AGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 27020 0.67 0.747866
Target:  5'- aGUuguGCGGCGugcCGACCUgGCCGCc- -3'
miRNA:   3'- gCGu--UGCCGUua-GUUGGAgCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 156 0.67 0.747866
Target:  5'- uCGguGCGaGCAcgCGAUCcgCGCC-CGGg -3'
miRNA:   3'- -GCguUGC-CGUuaGUUGGa-GCGGuGCC- -5'
24112 3' -53.6 NC_005263.2 + 42248 0.67 0.747866
Target:  5'- cCGCcuGCGGC--UCGACUUCGaCCGCa- -3'
miRNA:   3'- -GCGu-UGCCGuuAGUUGGAGC-GGUGcc -5'
24112 3' -53.6 NC_005263.2 + 27379 0.67 0.747866
Target:  5'- gCGCGGCGGCGGcCGgcgcgcugACCggcugCGUCACGa -3'
miRNA:   3'- -GCGUUGCCGUUaGU--------UGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 30728 0.67 0.747866
Target:  5'- cCGCGcCGGCAGaCAGCUUCa-CGCGGu -3'
miRNA:   3'- -GCGUuGCCGUUaGUUGGAGcgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 3084 0.67 0.746813
Target:  5'- gGCGuCGGCGAUCuucGCCUCGUucgacagCGCGc -3'
miRNA:   3'- gCGUuGCCGUUAGu--UGGAGCG-------GUGCc -5'
24112 3' -53.6 NC_005263.2 + 2424 0.67 0.737282
Target:  5'- -aCAGCGGCAGcguGCCUUGgUACGGc -3'
miRNA:   3'- gcGUUGCCGUUaguUGGAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 32495 0.67 0.737282
Target:  5'- aGCGACGGCAGUucCGACgCgauaagCGCCagcacgucgaacGCGGc -3'
miRNA:   3'- gCGUUGCCGUUA--GUUG-Ga-----GCGG------------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 46984 0.67 0.737282
Target:  5'- gCGCAgcACGGCGcg-GACUUCGCgCGCGa -3'
miRNA:   3'- -GCGU--UGCCGUuagUUGGAGCG-GUGCc -5'
24112 3' -53.6 NC_005263.2 + 42497 0.67 0.737282
Target:  5'- uGCAaacuGCcGCA--CGGCCUCGCCguGCGGa -3'
miRNA:   3'- gCGU----UGcCGUuaGUUGGAGCGG--UGCC- -5'
24112 3' -53.6 NC_005263.2 + 24479 0.67 0.737282
Target:  5'- gCGCGACGaGC--UCcGgCUCGaCCACGGu -3'
miRNA:   3'- -GCGUUGC-CGuuAGuUgGAGC-GGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 22187 0.67 0.737282
Target:  5'- uGCGAcgacCGGCAAcgCGACCguuacguaCGUCGCGGc -3'
miRNA:   3'- gCGUU----GCCGUUa-GUUGGa-------GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 41855 0.67 0.72659
Target:  5'- uGCccGACGGCA--CGACCgCGCCugGc -3'
miRNA:   3'- gCG--UUGCCGUuaGUUGGaGCGGugCc -5'
24112 3' -53.6 NC_005263.2 + 33858 0.67 0.72659
Target:  5'- gGCcGCcGCAAgcCAGCCcgcaCGCCACGGg -3'
miRNA:   3'- gCGuUGcCGUUa-GUUGGa---GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 12112 0.67 0.72659
Target:  5'- gCGCAGCGGCGcgCGcGCCauuacgcgCGCUccagGCGGu -3'
miRNA:   3'- -GCGUUGCCGUuaGU-UGGa-------GCGG----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 17139 0.67 0.715801
Target:  5'- gGCuucAUGGUcGUCGACgUCGgCACGGc -3'
miRNA:   3'- gCGu--UGCCGuUAGUUGgAGCgGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.