miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 2022 0.66 0.788878
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
24112 3' -53.6 NC_005263.2 + 37944 0.66 0.788878
Target:  5'- gGCAGcCGGUGcgCAACCggccgaUGCCGCGc -3'
miRNA:   3'- gCGUU-GCCGUuaGUUGGa-----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 17805 0.66 0.788878
Target:  5'- gCGC-AUGGCAAggCGGCCgaggaUGCCGCGc -3'
miRNA:   3'- -GCGuUGCCGUUa-GUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 29047 0.66 0.787883
Target:  5'- aCGC-GCGGCcuuggauagcacgAcgCGGCC-CGCUACGGc -3'
miRNA:   3'- -GCGuUGCCG-------------UuaGUUGGaGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 28914 0.66 0.778847
Target:  5'- uGCGcCGcGCugauccgucccAUCAGuuCCUCGCCACGGc -3'
miRNA:   3'- gCGUuGC-CGu----------UAGUU--GGAGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 28978 0.66 0.778847
Target:  5'- gCGCAAgcgccCGGCGAU--GCgCUCGgCGCGGc -3'
miRNA:   3'- -GCGUU-----GCCGUUAguUG-GAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 29510 0.66 0.778847
Target:  5'- cCGCuGCGGCGuccGUCGGCg-CGCCAgcaguggcCGGg -3'
miRNA:   3'- -GCGuUGCCGU---UAGUUGgaGCGGU--------GCC- -5'
24112 3' -53.6 NC_005263.2 + 42903 0.66 0.778847
Target:  5'- uCGCGACGGUAGgacGCCgCGCCugcaGGc -3'
miRNA:   3'- -GCGUUGCCGUUaguUGGaGCGGug--CC- -5'
24112 3' -53.6 NC_005263.2 + 18593 0.66 0.778847
Target:  5'- gGCAACGGCugg-AACgaCGCCaugcGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGgaGCGG----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 32641 0.66 0.777836
Target:  5'- cCGCAgcACGGCAaaucGUCGcucauuucgcgcuGCCUCGCgccguaccugUACGGc -3'
miRNA:   3'- -GCGU--UGCCGU----UAGU-------------UGGAGCG----------GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 19786 0.66 0.768661
Target:  5'- gGCu-CGGCGGcCGACCagauucgCGCCGCGa -3'
miRNA:   3'- gCGuuGCCGUUaGUUGGa------GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 32643 0.66 0.768661
Target:  5'- aGCAGCGGCcgaaAGCCUuccggaUGgCGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGGA------GCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 43480 0.66 0.768661
Target:  5'- uCGCGAUGGCGcUCAauuacggcACCUCGaagcugccggCGCGGc -3'
miRNA:   3'- -GCGUUGCCGUuAGU--------UGGAGCg---------GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 5953 0.66 0.768661
Target:  5'- uGCAcCGGCAAcuggCGcACCUCGCgACa- -3'
miRNA:   3'- gCGUuGCCGUUa---GU-UGGAGCGgUGcc -5'
24112 3' -53.6 NC_005263.2 + 45382 0.66 0.768661
Target:  5'- uGUGACGGgGAcgaaCAAUCUCGCCgACGa -3'
miRNA:   3'- gCGUUGCCgUUa---GUUGGAGCGG-UGCc -5'
24112 3' -53.6 NC_005263.2 + 39707 0.66 0.75833
Target:  5'- uCGCcgaGGCGGCGcgcuuccugGUCGGCCUgccugCGCCACu- -3'
miRNA:   3'- -GCG---UUGCCGU---------UAGUUGGA-----GCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 38983 0.66 0.75833
Target:  5'- aCGCGAcCGGCAAUCGccGCUUCauGCC-CGu -3'
miRNA:   3'- -GCGUU-GCCGUUAGU--UGGAG--CGGuGCc -5'
24112 3' -53.6 NC_005263.2 + 7287 0.66 0.75833
Target:  5'- aGCGGCGGCAGUU--CUUUgaGCCACaGGc -3'
miRNA:   3'- gCGUUGCCGUUAGuuGGAG--CGGUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 44165 0.66 0.75833
Target:  5'- uGCAgaACGGCGccaaccugccgGUCGGCCUgcCGCCAUu- -3'
miRNA:   3'- gCGU--UGCCGU-----------UAGUUGGA--GCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 17277 0.66 0.757289
Target:  5'- -uCGACGGuCAAgcaGACCuggcgcgaggcagUCGCCACGGc -3'
miRNA:   3'- gcGUUGCC-GUUag-UUGG-------------AGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.