miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 16838 0.69 0.627409
Target:  5'- uGCGACaGCAcuUCGACCUgcccggCGCCGCGc -3'
miRNA:   3'- gCGUUGcCGUu-AGUUGGA------GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 44403 0.7 0.560959
Target:  5'- aCGCGcGCGGCAuuggcGUCGACgUCGaaGCGGc -3'
miRNA:   3'- -GCGU-UGCCGU-----UAGUUGgAGCggUGCC- -5'
24112 3' -53.6 NC_005263.2 + 38440 0.72 0.434763
Target:  5'- aCGCcggccacggucaaGACGGCGAUCGagACgCUUGCCGCGu -3'
miRNA:   3'- -GCG-------------UUGCCGUUAGU--UG-GAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18455 0.79 0.179764
Target:  5'- cCGCAACGGUGugucguUCAACCUCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUu-----AGUUGGAGCGGUgcc -5'
24112 3' -53.6 NC_005263.2 + 34570 0.68 0.693981
Target:  5'- gCGCAGCcaCGGUCAGCgUCGCUugauuacucGCGGa -3'
miRNA:   3'- -GCGUUGccGUUAGUUGgAGCGG---------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 35484 0.68 0.649695
Target:  5'- -cCGACGucgucGCAGUUAGCgUCGUCGCGGu -3'
miRNA:   3'- gcGUUGC-----CGUUAGUUGgAGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 12018 0.7 0.539186
Target:  5'- aCGCGACGGCGcgcUCAAgCUUGCgC-CGGu -3'
miRNA:   3'- -GCGUUGCCGUu--AGUUgGAGCG-GuGCC- -5'
24112 3' -53.6 NC_005263.2 + 14027 0.79 0.165519
Target:  5'- aGCGACGGCGAcgguUCGGCCacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 17181 0.68 0.649695
Target:  5'- gCGCAgcucGCGGCGuac-GCCgUCGCCGCGc -3'
miRNA:   3'- -GCGU----UGCCGUuaguUGG-AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 44929 0.83 0.091323
Target:  5'- gCGCAGCGGCAGUUAuuCCgCGCCACGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUu-GGaGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 35866 0.7 0.550039
Target:  5'- gGCuGCGGCAGcccCAaauACUUCGCCGCGu -3'
miRNA:   3'- gCGuUGCCGUUa--GU---UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 9032 0.69 0.638555
Target:  5'- gCGCGACGGCGA---GCCg-GCUACGa -3'
miRNA:   3'- -GCGUUGCCGUUaguUGGagCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 20004 0.71 0.49658
Target:  5'- cCGuCAACGacGCGAUCGGCCgCGCCaacacACGGg -3'
miRNA:   3'- -GC-GUUGC--CGUUAGUUGGaGCGG-----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 27776 0.72 0.465645
Target:  5'- uGCGGCGGCAGgccauGCUUCG-CGCGGu -3'
miRNA:   3'- gCGUUGCCGUUagu--UGGAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 20538 0.73 0.388474
Target:  5'- uGUcGgGGCGuaCAACCUCGCCGCGa -3'
miRNA:   3'- gCGuUgCCGUuaGUUGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 1512 0.76 0.261299
Target:  5'- aGCGACGGCgAGUCAGCCugcagcgugaUCGUCAgCGGc -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
24112 3' -53.6 NC_005263.2 + 23806 0.67 0.704927
Target:  5'- uGcCGGCGGCcGUCuuGAUCgUCGCCGCGa -3'
miRNA:   3'- gC-GUUGCCGuUAG--UUGG-AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 7139 0.67 0.70165
Target:  5'- aCGUAACGGCuauGUCAagcgACCcuauugcgcggccaUCGCCGCu- -3'
miRNA:   3'- -GCGUUGCCGu--UAGU----UGG--------------AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 37527 0.68 0.671915
Target:  5'- uGCAGauCGaGCAAUgGGCCgccgGCCACGGc -3'
miRNA:   3'- gCGUU--GC-CGUUAgUUGGag--CGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 21142 0.68 0.660819
Target:  5'- gCGCAggACuGCAGUCcgacacccggcGGCUaCGCCACGGg -3'
miRNA:   3'- -GCGU--UGcCGUUAG-----------UUGGaGCGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.