miRNA display CGI


Results 1 - 20 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 11302 0.85 0.06829
Target:  5'- aGCAGCGGCAAUUuauGGCCUCGCCA-GGc -3'
miRNA:   3'- gCGUUGCCGUUAG---UUGGAGCGGUgCC- -5'
24112 3' -53.6 NC_005263.2 + 12018 0.7 0.539186
Target:  5'- aCGCGACGGCGcgcUCAAgCUUGCgC-CGGu -3'
miRNA:   3'- -GCGUUGCCGUu--AGUUgGAGCG-GuGCC- -5'
24112 3' -53.6 NC_005263.2 + 44403 0.7 0.560959
Target:  5'- aCGCGcGCGGCAuuggcGUCGACgUCGaaGCGGc -3'
miRNA:   3'- -GCGU-UGCCGU-----UAGUUGgAGCggUGCC- -5'
24112 3' -53.6 NC_005263.2 + 9715 0.66 0.808427
Target:  5'- cCGCuGCGGCGcgCuugcGCUcguUCGCCACa- -3'
miRNA:   3'- -GCGuUGCCGUuaGu---UGG---AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 1512 0.76 0.261299
Target:  5'- aGCGACGGCgAGUCAGCCugcagcgugaUCGUCAgCGGc -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
24112 3' -53.6 NC_005263.2 + 33985 0.74 0.336381
Target:  5'- uCGUAGCGGCGAggcCGGCCguguuggcugCGUCGCGGc -3'
miRNA:   3'- -GCGUUGCCGUUa--GUUGGa---------GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 20538 0.73 0.388474
Target:  5'- uGUcGgGGCGuaCAACCUCGCCGCGa -3'
miRNA:   3'- gCGuUgCCGUuaGUUGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18613 0.72 0.417385
Target:  5'- cCGCAGCGGCGuucgcggcagguggCAACCcgggCGCCGCuGGc -3'
miRNA:   3'- -GCGUUGCCGUua------------GUUGGa---GCGGUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 27776 0.72 0.465645
Target:  5'- uGCGGCGGCAGgccauGCUUCG-CGCGGu -3'
miRNA:   3'- gCGUUGCCGUUagu--UGGAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 11524 0.7 0.528407
Target:  5'- gCGCGaugaagGCGGCGcgguucGUCGucACCUUGCCGCGc -3'
miRNA:   3'- -GCGU------UGCCGU------UAGU--UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 30292 0.71 0.486161
Target:  5'- cCGCGcGCGGCAuccUCGgccGCCUUGCCAUGc -3'
miRNA:   3'- -GCGU-UGCCGUu--AGU---UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 38440 0.72 0.434763
Target:  5'- aCGCcggccacggucaaGACGGCGAUCGagACgCUUGCCGCGu -3'
miRNA:   3'- -GCG-------------UUGCCGUUAGU--UG-GAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 44929 0.83 0.091323
Target:  5'- gCGCAGCGGCAGUUAuuCCgCGCCACGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUu-GGaGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 20004 0.71 0.49658
Target:  5'- cCGuCAACGacGCGAUCGGCCgCGCCaacacACGGg -3'
miRNA:   3'- -GC-GUUGC--CGUUAGUUGGaGCGG-----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 14027 0.79 0.165519
Target:  5'- aGCGACGGCGAcgguUCGGCCacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 20823 0.72 0.426022
Target:  5'- uGCAggcGCGGC--UCGGCCUCGCgCAguCGGg -3'
miRNA:   3'- gCGU---UGCCGuuAGUUGGAGCG-GU--GCC- -5'
24112 3' -53.6 NC_005263.2 + 19879 0.71 0.517708
Target:  5'- gCGCGGCGagcgcggccgauGCAGgccacCAACagCUCGCCACGGa -3'
miRNA:   3'- -GCGUUGC------------CGUUa----GUUG--GAGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 35866 0.7 0.550039
Target:  5'- gGCuGCGGCAGcccCAaauACUUCGCCGCGu -3'
miRNA:   3'- gCGuUGCCGUUa--GU---UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18455 0.79 0.179764
Target:  5'- cCGCAACGGUGugucguUCAACCUCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUu-----AGUUGGAGCGGUgcc -5'
24112 3' -53.6 NC_005263.2 + 29072 0.74 0.344699
Target:  5'- uCGgGGCGGCGcgcAUCGGCCgUCGCUACGc -3'
miRNA:   3'- -GCgUUGCCGU---UAGUUGG-AGCGGUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.