miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 156 0.67 0.747866
Target:  5'- uCGguGCGaGCAcgCGAUCcgCGCC-CGGg -3'
miRNA:   3'- -GCguUGC-CGUuaGUUGGa-GCGGuGCC- -5'
24112 3' -53.6 NC_005263.2 + 612 0.7 0.550039
Target:  5'- uGCuuCGcGCAAUCGGCUgggguguaggUCGCCACGc -3'
miRNA:   3'- gCGuuGC-CGUUAGUUGG----------AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 964 0.78 0.195086
Target:  5'- aCGUAGCGGCGGUC-GCCUgCGCguCGGa -3'
miRNA:   3'- -GCGUUGCCGUUAGuUGGA-GCGguGCC- -5'
24112 3' -53.6 NC_005263.2 + 1167 0.68 0.660819
Target:  5'- cCGUcGCGGCGAcuUguGCCUCGUgcugCGCGGc -3'
miRNA:   3'- -GCGuUGCCGUU--AguUGGAGCG----GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 1512 0.76 0.261299
Target:  5'- aGCGACGGCgAGUCAGCCugcagcgugaUCGUCAgCGGc -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
24112 3' -53.6 NC_005263.2 + 1860 0.67 0.715801
Target:  5'- gGCGACGuGCGGUUcuggcgcGCCUgGCC-CGGa -3'
miRNA:   3'- gCGUUGC-CGUUAGu------UGGAgCGGuGCC- -5'
24112 3' -53.6 NC_005263.2 + 2022 0.66 0.788878
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
24112 3' -53.6 NC_005263.2 + 2384 0.71 0.486161
Target:  5'- aGCAccgaGCGGCAGgccggggCAccacGCUUCGCCGCGa -3'
miRNA:   3'- gCGU----UGCCGUUa------GU----UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 2424 0.67 0.737282
Target:  5'- -aCAGCGGCAGcguGCCUUGgUACGGc -3'
miRNA:   3'- gcGUUGCCGUUaguUGGAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 2766 0.72 0.465645
Target:  5'- uCGCGAccgacCGGCAucaCGACCUCGCgACcGGg -3'
miRNA:   3'- -GCGUU-----GCCGUua-GUUGGAGCGgUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 2862 0.68 0.649695
Target:  5'- uCGCAGCGuucGCGAaCGACgUCGCaGCGGc -3'
miRNA:   3'- -GCGUUGC---CGUUaGUUGgAGCGgUGCC- -5'
24112 3' -53.6 NC_005263.2 + 3084 0.67 0.746813
Target:  5'- gGCGuCGGCGAUCuucGCCUCGUucgacagCGCGc -3'
miRNA:   3'- gCGUuGCCGUUAGu--UGGAGCG-------GUGCc -5'
24112 3' -53.6 NC_005263.2 + 3350 0.67 0.702744
Target:  5'- gCGCcGCGcGCGGUCGAgCgaccagacagugCGCCAUGGu -3'
miRNA:   3'- -GCGuUGC-CGUUAGUUgGa-----------GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 3539 0.68 0.692883
Target:  5'- uCGCGGCcGGCGucGUCcauguCCUCGCCaagcgucGCGGc -3'
miRNA:   3'- -GCGUUG-CCGU--UAGuu---GGAGCGG-------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 3926 0.68 0.693981
Target:  5'- uGCAcCGGCAGgccuagcGCCUCGCaCGCGc -3'
miRNA:   3'- gCGUuGCCGUUagu----UGGAGCG-GUGCc -5'
24112 3' -53.6 NC_005263.2 + 5953 0.66 0.768661
Target:  5'- uGCAcCGGCAAcuggCGcACCUCGCgACa- -3'
miRNA:   3'- gCGUuGCCGUUa---GU-UGGAGCGgUGcc -5'
24112 3' -53.6 NC_005263.2 + 6843 0.7 0.565344
Target:  5'- aGCGACGGCGAcaCGACCggcgacagguagcccUCGCgCACGa -3'
miRNA:   3'- gCGUUGCCGUUa-GUUGG---------------AGCG-GUGCc -5'
24112 3' -53.6 NC_005263.2 + 7139 0.67 0.70165
Target:  5'- aCGUAACGGCuauGUCAagcgACCcuauugcgcggccaUCGCCGCu- -3'
miRNA:   3'- -GCGUUGCCGu--UAGU----UGG--------------AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 7287 0.66 0.75833
Target:  5'- aGCGGCGGCAGUU--CUUUgaGCCACaGGc -3'
miRNA:   3'- gCGUUGCCGUUAGuuGGAG--CGGUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 9032 0.69 0.638555
Target:  5'- gCGCGACGGCGA---GCCg-GCUACGa -3'
miRNA:   3'- -GCGUUGCCGUUaguUGGagCGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.