miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 9715 0.66 0.808427
Target:  5'- cCGCuGCGGCGcgCuugcGCUcguUCGCCACa- -3'
miRNA:   3'- -GCGuUGCCGUuaGu---UGG---AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 2022 0.66 0.788878
Target:  5'- cCGCAGCGGCGcaUAACggCGCC-CGc -3'
miRNA:   3'- -GCGUUGCCGUuaGUUGgaGCGGuGCc -5'
24112 3' -53.6 NC_005263.2 + 37944 0.66 0.788878
Target:  5'- gGCAGcCGGUGcgCAACCggccgaUGCCGCGc -3'
miRNA:   3'- gCGUU-GCCGUuaGUUGGa-----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 17805 0.66 0.788878
Target:  5'- gCGC-AUGGCAAggCGGCCgaggaUGCCGCGc -3'
miRNA:   3'- -GCGuUGCCGUUa-GUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 29047 0.66 0.787883
Target:  5'- aCGC-GCGGCcuuggauagcacgAcgCGGCC-CGCUACGGc -3'
miRNA:   3'- -GCGuUGCCG-------------UuaGUUGGaGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 29510 0.66 0.778847
Target:  5'- cCGCuGCGGCGuccGUCGGCg-CGCCAgcaguggcCGGg -3'
miRNA:   3'- -GCGuUGCCGU---UAGUUGgaGCGGU--------GCC- -5'
24112 3' -53.6 NC_005263.2 + 42903 0.66 0.778847
Target:  5'- uCGCGACGGUAGgacGCCgCGCCugcaGGc -3'
miRNA:   3'- -GCGUUGCCGUUaguUGGaGCGGug--CC- -5'
24112 3' -53.6 NC_005263.2 + 18593 0.66 0.778847
Target:  5'- gGCAACGGCugg-AACgaCGCCaugcGCGGg -3'
miRNA:   3'- gCGUUGCCGuuagUUGgaGCGG----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 28978 0.66 0.778847
Target:  5'- gCGCAAgcgccCGGCGAU--GCgCUCGgCGCGGc -3'
miRNA:   3'- -GCGUU-----GCCGUUAguUG-GAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 39395 0.66 0.788878
Target:  5'- aCGCGAUGgacGCGGcCGACCugUCGCCGCa- -3'
miRNA:   3'- -GCGUUGC---CGUUaGUUGG--AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 38834 0.66 0.797763
Target:  5'- -cCAACGGCAAgaugaucgcggacUCGAgCggCGUCACGGu -3'
miRNA:   3'- gcGUUGCCGUU-------------AGUUgGa-GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 36949 0.66 0.798742
Target:  5'- uCGCAGcCGGC---CAGCUagGCUGCGGg -3'
miRNA:   3'- -GCGUU-GCCGuuaGUUGGagCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 18520 0.66 0.808427
Target:  5'- uCGCGAUGgacGCGAUCAaagcgGCUcgCGCCGCGu -3'
miRNA:   3'- -GCGUUGC---CGUUAGU-----UGGa-GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 16381 0.66 0.808427
Target:  5'- gGCGGCGGCcuGAUgAAgCUgGCCggcaucGCGGg -3'
miRNA:   3'- gCGUUGCCG--UUAgUUgGAgCGG------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 38648 0.66 0.807467
Target:  5'- cCGCGuCGcGCAucgacgcCAACCUCGCCaagaucaaggugcGCGGc -3'
miRNA:   3'- -GCGUuGC-CGUua-----GUUGGAGCGG-------------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 45769 0.66 0.802638
Target:  5'- gCGCAACGGCcgcacgGugCUCGCguuccgccaguucaaCGCGGg -3'
miRNA:   3'- -GCGUUGCCGuuag--UugGAGCG---------------GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 32151 0.66 0.798742
Target:  5'- uCGCGGCGGU--UCGGCCguuaCGUCGaGGg -3'
miRNA:   3'- -GCGUUGCCGuuAGUUGGa---GCGGUgCC- -5'
24112 3' -53.6 NC_005263.2 + 47414 0.66 0.798742
Target:  5'- gGCGGCGGCA--CGAUCgCGCUcaccgagcACGGg -3'
miRNA:   3'- gCGUUGCCGUuaGUUGGaGCGG--------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 25161 0.66 0.798742
Target:  5'- uGgGACGGUcGUCAACaucgUCGUUugGGa -3'
miRNA:   3'- gCgUUGCCGuUAGUUGg---AGCGGugCC- -5'
24112 3' -53.6 NC_005263.2 + 38776 0.66 0.798742
Target:  5'- gCGCAA-GGCAuugccggCGACUUCGCCAg-- -3'
miRNA:   3'- -GCGUUgCCGUua-----GUUGGAGCGGUgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.