miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 47379 1.1 0.001183
Target:  5'- gCGCAACGGCAAUCAACCUCGCCACGGc -3'
miRNA:   3'- -GCGUUGCCGUUAGUUGGAGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 11302 0.85 0.06829
Target:  5'- aGCAGCGGCAAUUuauGGCCUCGCCA-GGc -3'
miRNA:   3'- gCGUUGCCGUUAG---UUGGAGCGGUgCC- -5'
24112 3' -53.6 NC_005263.2 + 44929 0.83 0.091323
Target:  5'- gCGCAGCGGCAGUUAuuCCgCGCCACGa -3'
miRNA:   3'- -GCGUUGCCGUUAGUu-GGaGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 14027 0.79 0.165519
Target:  5'- aGCGACGGCGAcgguUCGGCCacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18455 0.79 0.179764
Target:  5'- cCGCAACGGUGugucguUCAACCUCGCCGg-- -3'
miRNA:   3'- -GCGUUGCCGUu-----AGUUGGAGCGGUgcc -5'
24112 3' -53.6 NC_005263.2 + 964 0.78 0.195086
Target:  5'- aCGUAGCGGCGGUC-GCCUgCGCguCGGa -3'
miRNA:   3'- -GCGUUGCCGUUAGuUGGA-GCGguGCC- -5'
24112 3' -53.6 NC_005263.2 + 24551 0.77 0.235317
Target:  5'- gCGCgGGCGGCGG-CGGCUgCGCCACGGu -3'
miRNA:   3'- -GCG-UUGCCGUUaGUUGGaGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 45216 0.76 0.248027
Target:  5'- aCGUcuCGGCcaacAUCAGCCUCGCCGCu- -3'
miRNA:   3'- -GCGuuGCCGu---UAGUUGGAGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 44020 0.76 0.254592
Target:  5'- cCGCu-CGGCAAggguggCGACUUCGCCGCGu -3'
miRNA:   3'- -GCGuuGCCGUUa-----GUUGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 1512 0.76 0.261299
Target:  5'- aGCGACGGCgAGUCAGCCugcagcgugaUCGUCAgCGGc -3'
miRNA:   3'- gCGUUGCCG-UUAGUUGG----------AGCGGU-GCC- -5'
24112 3' -53.6 NC_005263.2 + 37990 0.75 0.282284
Target:  5'- gGUGGCGGCAA-CGAaCUCGCCACGa -3'
miRNA:   3'- gCGUUGCCGUUaGUUgGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 43243 0.75 0.304583
Target:  5'- aGCGGCGGCAG-CGGCaUCGgCACGGc -3'
miRNA:   3'- gCGUUGCCGUUaGUUGgAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 33985 0.74 0.336381
Target:  5'- uCGUAGCGGCGAggcCGGCCguguuggcugCGUCGCGGc -3'
miRNA:   3'- -GCGUUGCCGUUa--GUUGGa---------GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 29072 0.74 0.344699
Target:  5'- uCGgGGCGGCGcgcAUCGGCCgUCGCUACGc -3'
miRNA:   3'- -GCgUUGCCGU---UAGUUGG-AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18780 0.74 0.361776
Target:  5'- uCGCGcUGGUuAUCGugCUCGCCGCGc -3'
miRNA:   3'- -GCGUuGCCGuUAGUugGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 24841 0.74 0.361776
Target:  5'- gGCAACGGCGGU--GCCggugCGCCAgcCGGc -3'
miRNA:   3'- gCGUUGCCGUUAguUGGa---GCGGU--GCC- -5'
24112 3' -53.6 NC_005263.2 + 20538 0.73 0.388474
Target:  5'- uGUcGgGGCGuaCAACCUCGCCGCGa -3'
miRNA:   3'- gCGuUgCCGUuaGUUGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 18613 0.72 0.417385
Target:  5'- cCGCAGCGGCGuucgcggcagguggCAACCcgggCGCCGCuGGc -3'
miRNA:   3'- -GCGUUGCCGUua------------GUUGGa---GCGGUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 9606 0.72 0.426022
Target:  5'- gGCAGC-GCGAUCAucGCgucgCGCCACGGa -3'
miRNA:   3'- gCGUUGcCGUUAGU--UGga--GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 20823 0.72 0.426022
Target:  5'- uGCAggcGCGGC--UCGGCCUCGCgCAguCGGg -3'
miRNA:   3'- gCGU---UGCCGuuAGUUGGAGCG-GU--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.