miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 38440 0.72 0.434763
Target:  5'- aCGCcggccacggucaaGACGGCGAUCGagACgCUUGCCGCGu -3'
miRNA:   3'- -GCG-------------UUGCCGUUAGU--UG-GAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 14113 0.72 0.445587
Target:  5'- aCGCAgccaacACGGC---CGGCCUCGCCGCu- -3'
miRNA:   3'- -GCGU------UGCCGuuaGUUGGAGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 38894 0.72 0.464631
Target:  5'- aCGcCGACGGCAccGUCAcgagcaaGCCggCGCCGCGc -3'
miRNA:   3'- -GC-GUUGCCGU--UAGU-------UGGa-GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 27776 0.72 0.465645
Target:  5'- uGCGGCGGCAGgccauGCUUCG-CGCGGu -3'
miRNA:   3'- gCGUUGCCGUUagu--UGGAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 2766 0.72 0.465645
Target:  5'- uCGCGAccgacCGGCAucaCGACCUCGCgACcGGg -3'
miRNA:   3'- -GCGUU-----GCCGUua-GUUGGAGCGgUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 27457 0.72 0.465645
Target:  5'- cCGCGACGaGCGGcgCGGCCacugCGgCCACGGc -3'
miRNA:   3'- -GCGUUGC-CGUUa-GUUGGa---GC-GGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 40218 0.71 0.486161
Target:  5'- aGCAugGGCGAUCAuccGCCgauuccCGCUugGc -3'
miRNA:   3'- gCGUugCCGUUAGU---UGGa-----GCGGugCc -5'
24112 3' -53.6 NC_005263.2 + 2384 0.71 0.486161
Target:  5'- aGCAccgaGCGGCAGgccggggCAccacGCUUCGCCGCGa -3'
miRNA:   3'- gCGU----UGCCGUUa------GU----UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 30292 0.71 0.486161
Target:  5'- cCGCGcGCGGCAuccUCGgccGCCUUGCCAUGc -3'
miRNA:   3'- -GCGU-UGCCGUu--AGU---UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 20004 0.71 0.49658
Target:  5'- cCGuCAACGacGCGAUCGGCCgCGCCaacacACGGg -3'
miRNA:   3'- -GC-GUUGC--CGUUAGUUGGaGCGG-----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 20690 0.71 0.517708
Target:  5'- gCGCGAC-GCGA-CAGCaCUCGCUACGa -3'
miRNA:   3'- -GCGUUGcCGUUaGUUG-GAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 19879 0.71 0.517708
Target:  5'- gCGCGGCGagcgcggccgauGCAGgccacCAACagCUCGCCACGGa -3'
miRNA:   3'- -GCGUUGC------------CGUUa----GUUG--GAGCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 11524 0.7 0.528407
Target:  5'- gCGCGaugaagGCGGCGcgguucGUCGucACCUUGCCGCGc -3'
miRNA:   3'- -GCGU------UGCCGU------UAGU--UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 12018 0.7 0.539186
Target:  5'- aCGCGACGGCGcgcUCAAgCUUGCgC-CGGu -3'
miRNA:   3'- -GCGUUGCCGUu--AGUUgGAGCG-GuGCC- -5'
24112 3' -53.6 NC_005263.2 + 35866 0.7 0.550039
Target:  5'- gGCuGCGGCAGcccCAaauACUUCGCCGCGu -3'
miRNA:   3'- gCGuUGCCGUUa--GU---UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 612 0.7 0.550039
Target:  5'- uGCuuCGcGCAAUCGGCUgggguguaggUCGCCACGc -3'
miRNA:   3'- gCGuuGC-CGUUAGUUGG----------AGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 17083 0.7 0.550039
Target:  5'- aGCAGC-GCAcgCcgcGCCUCGCCGCa- -3'
miRNA:   3'- gCGUUGcCGUuaGu--UGGAGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 44403 0.7 0.560959
Target:  5'- aCGCGcGCGGCAuuggcGUCGACgUCGaaGCGGc -3'
miRNA:   3'- -GCGU-UGCCGU-----UAGUUGgAGCggUGCC- -5'
24112 3' -53.6 NC_005263.2 + 22359 0.7 0.560959
Target:  5'- aCGCGGCGGCAagaaagcguGUCGAUCggCGgCAuCGGg -3'
miRNA:   3'- -GCGUUGCCGU---------UAGUUGGa-GCgGU-GCC- -5'
24112 3' -53.6 NC_005263.2 + 6843 0.7 0.565344
Target:  5'- aGCGACGGCGAcaCGACCggcgacagguagcccUCGCgCACGa -3'
miRNA:   3'- gCGUUGCCGUUa-GUUGG---------------AGCG-GUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.