miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24112 3' -53.6 NC_005263.2 + 9537 0.69 0.60514
Target:  5'- uGC-GCGGCAG-CGACCgacgcggCGCuCGCGGc -3'
miRNA:   3'- gCGuUGCCGUUaGUUGGa------GCG-GUGCC- -5'
24112 3' -53.6 NC_005263.2 + 9606 0.72 0.426022
Target:  5'- gGCAGC-GCGAUCAucGCgucgCGCCACGGa -3'
miRNA:   3'- gCGUUGcCGUUAGU--UGga--GCGGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 9715 0.66 0.808427
Target:  5'- cCGCuGCGGCGcgCuugcGCUcguUCGCCACa- -3'
miRNA:   3'- -GCGuUGCCGUuaGu---UGG---AGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 9784 0.68 0.671915
Target:  5'- uCGCAccgaACGGgGGc--GCCUCGCCGCGu -3'
miRNA:   3'- -GCGU----UGCCgUUaguUGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 10498 0.68 0.649695
Target:  5'- cCGCGACGGCugauaAACCagCGCguCGGc -3'
miRNA:   3'- -GCGUUGCCGuuag-UUGGa-GCGguGCC- -5'
24112 3' -53.6 NC_005263.2 + 11302 0.85 0.06829
Target:  5'- aGCAGCGGCAAUUuauGGCCUCGCCA-GGc -3'
miRNA:   3'- gCGUUGCCGUUAG---UUGGAGCGGUgCC- -5'
24112 3' -53.6 NC_005263.2 + 11524 0.7 0.528407
Target:  5'- gCGCGaugaagGCGGCGcgguucGUCGucACCUUGCCGCGc -3'
miRNA:   3'- -GCGU------UGCCGU------UAGU--UGGAGCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 11803 0.66 0.798742
Target:  5'- aCGCGcCGGUcGUC-ACUUCGCgCGCGa -3'
miRNA:   3'- -GCGUuGCCGuUAGuUGGAGCG-GUGCc -5'
24112 3' -53.6 NC_005263.2 + 12018 0.7 0.539186
Target:  5'- aCGCGACGGCGcgcUCAAgCUUGCgC-CGGu -3'
miRNA:   3'- -GCGUUGCCGUu--AGUUgGAGCG-GuGCC- -5'
24112 3' -53.6 NC_005263.2 + 12112 0.67 0.72659
Target:  5'- gCGCAGCGGCGcgCGcGCCauuacgcgCGCUccagGCGGu -3'
miRNA:   3'- -GCGUUGCCGUuaGU-UGGa-------GCGG----UGCC- -5'
24112 3' -53.6 NC_005263.2 + 12177 0.69 0.60514
Target:  5'- aCGUAuaACGGCAcgC-GCgUCGCCACuGGu -3'
miRNA:   3'- -GCGU--UGCCGUuaGuUGgAGCGGUG-CC- -5'
24112 3' -53.6 NC_005263.2 + 12492 0.67 0.715801
Target:  5'- gCGCAuuGCGGCAuccugcgcgcCGGCUUCG-CGCGGg -3'
miRNA:   3'- -GCGU--UGCCGUua--------GUUGGAGCgGUGCC- -5'
24112 3' -53.6 NC_005263.2 + 14027 0.79 0.165519
Target:  5'- aGCGACGGCGAcgguUCGGCCacgggCGCCGCGu -3'
miRNA:   3'- gCGUUGCCGUU----AGUUGGa----GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 14113 0.72 0.445587
Target:  5'- aCGCAgccaacACGGC---CGGCCUCGCCGCu- -3'
miRNA:   3'- -GCGU------UGCCGuuaGUUGGAGCGGUGcc -5'
24112 3' -53.6 NC_005263.2 + 14207 0.66 0.808427
Target:  5'- cCGCGACGGCGu---GCCguUCGCgCGCa- -3'
miRNA:   3'- -GCGUUGCCGUuaguUGG--AGCG-GUGcc -5'
24112 3' -53.6 NC_005263.2 + 14436 0.66 0.788878
Target:  5'- uGCGACGGCGugcgCGcgcGCCUCuuucgaGCCgaGCGGc -3'
miRNA:   3'- gCGUUGCCGUua--GU---UGGAG------CGG--UGCC- -5'
24112 3' -53.6 NC_005263.2 + 15958 0.66 0.798742
Target:  5'- aCGUAACGGC---CAACC--GCCGCGa -3'
miRNA:   3'- -GCGUUGCCGuuaGUUGGagCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 16381 0.66 0.808427
Target:  5'- gGCGGCGGCcuGAUgAAgCUgGCCggcaucGCGGg -3'
miRNA:   3'- gCGUUGCCG--UUAgUUgGAgCGG------UGCC- -5'
24112 3' -53.6 NC_005263.2 + 16838 0.69 0.627409
Target:  5'- uGCGACaGCAcuUCGACCUgcccggCGCCGCGc -3'
miRNA:   3'- gCGUUGcCGUu-AGUUGGA------GCGGUGCc -5'
24112 3' -53.6 NC_005263.2 + 17083 0.7 0.550039
Target:  5'- aGCAGC-GCAcgCcgcGCCUCGCCGCa- -3'
miRNA:   3'- gCGUUGcCGUuaGu--UGGAGCGGUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.